Protein kinase domain
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom06g20970 pycom14g20340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1805 |
| Acc36I | ACCTGC | 2 cut(s) | 661, 1123 |
| AccB1I | GGYRCC | 1 cut(s) | 166 |
| AccBSI | CCGCTC | 2 cut(s) | 538, 1771 |
| AccII | CGCG | 1 cut(s) | 1337 |
| AciI | CCGC | 4 cut(s) | 259, 538, 678, 1771 |
| AclWI | GGATC | 3 cut(s) | 433, 1685, 1812 |
| AcoI | YGGCCR | 1 cut(s) | 134 |
| AcsI | RAATTY | 1 cut(s) | 848 |
| AcuI | CTGAAG | 4 cut(s) | 320, 762, 966, 1398 |
| AcyI | GRCGYC | 1 cut(s) | 167 |
| AfaI | GTAC | 2 cut(s) | 913, 1389 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 647, 755, 1448, 1552 |
| AflII | CTTAAG | 2 cut(s) | 902, 1162 |
| AjnI | CCWGG | 3 cut(s) | 700, 1063, 1330 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1792, 1824 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 985, 1017 |
| Alw21I | GWGCWC | 1 cut(s) | 1063 |
| Alw26I | GTCTC | 4 cut(s) | 451, 1045, 1317, 1591 |
| AlwI | GGATC | 3 cut(s) | 433, 1685, 1812 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1839 |
| AoxI | GGCC | 3 cut(s) | 134, 704, 1439 |
| ApeKI | GCWGC | 9 cut(s) | 108, 111, 114, 117, 126, 287, 521, 935, 1255 |
| ApoI | RAATTY | 1 cut(s) | 848 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 828, 860 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 329 |
| AspA2I | CCTAGG | 1 cut(s) | 1250 |
| AspLEI | GCGC | 3 cut(s) | 122, 169, 1337 |
| AspS9I | GGNCC | 5 cut(s) | 28, 650, 704, 1328, 1706 |
| AsuHPI | GGTGA | 5 cut(s) | 452, 812, 1046, 1541, 1778 |
| AsuII | TTCGAA | 1 cut(s) | 295 |
| AvaII | GGWCC | 4 cut(s) | 28, 650, 1328, 1706 |
| AvrII | CCTAGG | 1 cut(s) | 1250 |
| AxyI | CCTNAGG | 1 cut(s) | 882 |
| BanI | GGYRCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 2 cut(s) | 162, 913 |
| Bbv12I | GWGCWC | 1 cut(s) | 1063 |
| BbvCI | CCTCAGC | 1 cut(s) | 1743 |
| BbvI | GCAGC | 9 cut(s) | 120, 123, 126, 129, 138, 299, 508, 947, 1242 |
| BccI | CCATC | 1 cut(s) | 668 |
| BciT130I | CCWGG | 3 cut(s) | 702, 1065, 1332 |
| BciVI | GTATCC | 1 cut(s) | 1583 |
| BcoDI | GTCTC | 4 cut(s) | 451, 1045, 1317, 1591 |
| BfaI | CTAG | 5 cut(s) | 401, 831, 840, 1251, 1650 |
| BfmI | CTRYAG | 3 cut(s) | 654, 1443, 1822 |
| BfoI | RGCGCY | 2 cut(s) | 123, 170 |
| BfrI | CTTAAG | 2 cut(s) | 902, 1162 |
| BfuAI | ACCTGC | 2 cut(s) | 661, 1123 |
| BfuI | GTATCC | 1 cut(s) | 1583 |
| BisI | GCNGC | 9 cut(s) | 109, 112, 115, 118, 127, 288, 522, 936, 1256 |
| BlnI | CCTAGG | 1 cut(s) | 1250 |
| BlsI | GCNGC | 9 cut(s) | 110, 113, 116, 119, 128, 289, 523, 937, 1257 |
| Bme1390I | CCNGG | 3 cut(s) | 702, 1065, 1332 |
| Bme18I | GGWCC | 4 cut(s) | 28, 650, 1328, 1706 |
| BmgT120I | GGNCC | 5 cut(s) | 28, 650, 704, 1328, 1706 |
| BmiI | GGNNCC | 3 cut(s) | 43, 168, 1707 |
| BmrFI | CCNGG | 3 cut(s) | 702, 1065, 1332 |
| BmsI | GCATC | 2 cut(s) | 1477, 1499 |
| BoxI | GACNNNNGTC | 1 cut(s) | 366 |
| BpiI | GAAGAC | 2 cut(s) | 162, 913 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 347, 379 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1743 |
| Bpu14I | TTCGAA | 1 cut(s) | 295 |
| BpuEI | CTTGAG | 1 cut(s) | 1256 |
| Bsa29I | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1728 |
| BsaHI | GRCGYC | 1 cut(s) | 167 |
| BsaJI | CCNNGG | 6 cut(s) | 37, 700, 701, 915, 947, 1250 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1298, 1328 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 647, 755, 1448, 1552 |
| Bse118I | RCCGGY | 1 cut(s) | 132 |
| Bse1I | ACTGG | 4 cut(s) | 170, 490, 636, 1168 |
| Bse21I | CCTNAGG | 1 cut(s) | 882 |
| Bse3DI | GCAATG | 2 cut(s) | 652, 1347 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1728 |
| BseBI | CCWGG | 3 cut(s) | 702, 1065, 1332 |
| BseCI | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| BseDI | CCNNGG | 6 cut(s) | 37, 700, 701, 915, 947, 1250 |
| BseGI | GGATG | 3 cut(s) | 1390, 1492, 1729 |
| BseJI | GATNNNNATC | 1 cut(s) | 1728 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 647, 755, 1448, 1552 |
| BseMI | GCAATG | 2 cut(s) | 652, 1347 |
| BseMII | CTCAG | 7 cut(s) | 378, 722, 1089, 1176, 1218, 1357, 1734 |
| BseNI | ACTGG | 4 cut(s) | 170, 490, 636, 1168 |
| BseRI | GAGGAG | 1 cut(s) | 1760 |
| BseXI | GCAGC | 9 cut(s) | 120, 123, 126, 129, 138, 299, 508, 947, 1242 |
| BseYI | CCCAGC | 1 cut(s) | 560 |
| Bsh1236I | CGCG | 1 cut(s) | 1337 |
| BshFI | GGCC | 3 cut(s) | 136, 706, 1441 |
| BshNI | GGYRCC | 1 cut(s) | 166 |
| BshVI | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1063 |
| BsiSI | CCGG | 1 cut(s) | 133 |
| BslFI | GGGAC | 4 cut(s) | 407, 496, 577, 1568 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 647, 755, 1448, 1552 |
| BsmAI | GTCTC | 4 cut(s) | 451, 1045, 1317, 1591 |
| BsmBI | CGTCTC | 1 cut(s) | 1317 |
| BsmFI | GGGAC | 4 cut(s) | 407, 496, 577, 1568 |
| BsmI | GAATGC | 1 cut(s) | 584 |
| BsnI | GGCC | 3 cut(s) | 136, 706, 1441 |
| Bsp119I | TTCGAA | 1 cut(s) | 295 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1063 |
| Bsp143I | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| BspACI | CCGC | 4 cut(s) | 259, 538, 678, 1771 |
| BspANI | GGCC | 3 cut(s) | 136, 706, 1441 |
| BspCNI | CTCAG | 7 cut(s) | 377, 721, 1090, 1177, 1219, 1356, 1735 |
| BspDI | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| BspFNI | CGCG | 1 cut(s) | 1337 |
| BspHI | TCATGA | 1 cut(s) | 1633 |
| BspLI | GGNNCC | 3 cut(s) | 43, 168, 1707 |
| BspMAI | CTGCAG | 1 cut(s) | 658 |
| BspMI | ACCTGC | 2 cut(s) | 661, 1123 |
| BspPI | GGATC | 3 cut(s) | 433, 1685, 1812 |
| BspQI | GCTCTTC | 3 cut(s) | 297, 1144, 1368 |
| BspT104I | TTCGAA | 1 cut(s) | 295 |
| BspT107I | GGYRCC | 1 cut(s) | 166 |
| BspTI | CTTAAG | 2 cut(s) | 902, 1162 |
| BsrBI | CCGCTC | 2 cut(s) | 538, 1771 |
| BsrDI | GCAATG | 2 cut(s) | 652, 1347 |
| BsrFI | RCCGGY | 1 cut(s) | 132 |
| BsrI | ACTGG | 4 cut(s) | 170, 490, 636, 1168 |
| BssAI | RCCGGY | 1 cut(s) | 132 |
| BssECI | CCNNGG | 6 cut(s) | 37, 700, 701, 915, 947, 1250 |
| BssMI | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| BssNI | GRCGYC | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 3 cut(s) | 37, 947, 1250 |
| Bst2UI | CCWGG | 3 cut(s) | 702, 1065, 1332 |
| Bst4CI | ACNGT | 5 cut(s) | 610, 919, 1015, 1123, 1522 |
| Bst6I | CTCTTC | 7 cut(s) | 297, 348, 777, 1144, 1236, 1368, 1417 |
| BstACI | GRCGYC | 1 cut(s) | 167 |
| BstAFI | CTTAAG | 2 cut(s) | 902, 1162 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1487 |
| BstBI | TTCGAA | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 2 cut(s) | 69, 124 |
| BstDSI | CCRYGG | 1 cut(s) | 915 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 753, 1446 |
| BstF5I | GGATG | 3 cut(s) | 1390, 1492, 1729 |
| BstFNI | CGCG | 1 cut(s) | 1337 |
| BstH2I | RGCGCY | 2 cut(s) | 123, 170 |
| BstHHI | GCGC | 3 cut(s) | 122, 169, 1337 |
| BstKTI | GATC | 7 cut(s) | 428, 1501, 1693, 1732, 1736, 1816, 1820 |
| BstMAI | GTCTC | 4 cut(s) | 451, 1045, 1317, 1591 |
| BstMBI | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 114, 117, 123, 126, 287, 1358, 1487 |
| BstNI | CCWGG | 3 cut(s) | 702, 1065, 1332 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 366 |
| BstSCI | CCNGG | 3 cut(s) | 700, 1063, 1330 |
| BstSFI | CTRYAG | 3 cut(s) | 654, 1443, 1822 |
| BstUI | CGCG | 1 cut(s) | 1337 |
| BstV1I | GCAGC | 9 cut(s) | 120, 123, 126, 129, 138, 299, 508, 947, 1242 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 913 |
| BstX2I | RGATCY | 2 cut(s) | 425, 1690 |
| BstYI | RGATCY | 2 cut(s) | 425, 1690 |
| Bsu15I | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| Bsu36I | CCTNAGG | 1 cut(s) | 882 |
| BsuI | GTATCC | 1 cut(s) | 1583 |
| BsuRI | GGCC | 3 cut(s) | 136, 706, 1441 |
| BsuTUI | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| BtgI | CCRYGG | 1 cut(s) | 915 |
| BtsCI | GGATG | 3 cut(s) | 1390, 1492, 1729 |
| BtsI | GCAGTG | 1 cut(s) | 1687 |
| BtsIMutI | CAGTG | 2 cut(s) | 1687, 1840 |
| BveI | ACCTGC | 2 cut(s) | 661, 1123 |
| Cac8I | GCNNGC | 2 cut(s) | 69, 124 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1839 |
| CciI | TCATGA | 1 cut(s) | 1633 |
| CfoI | GCGC | 3 cut(s) | 122, 169, 1337 |
| Cfr10I | RCCGGY | 1 cut(s) | 132 |
| Cfr13I | GGNCC | 5 cut(s) | 28, 650, 704, 1328, 1706 |
| ClaI | ATCGAT | 4 cut(s) | 1497, 1535, 1732, 1816 |
| Csp6I | GTAC | 2 cut(s) | 912, 1388 |
| CviAII | CATG | 4 cut(s) | 857, 1594, 1634, 1676 |
| CviQI | GTAC | 2 cut(s) | 912, 1388 |
| DinI | GGCGCC | 1 cut(s) | 168 |
| DpnI | GATC | 7 cut(s) | 427, 1500, 1692, 1731, 1735, 1815, 1819 |
| DpnII | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| EaeI | YGGCCR | 1 cut(s) | 134 |
| Eam1104I | CTCTTC | 7 cut(s) | 297, 348, 777, 1144, 1236, 1368, 1417 |
| EarI | CTCTTC | 7 cut(s) | 297, 348, 777, 1144, 1236, 1368, 1417 |
| Eco130I | CCWWGG | 3 cut(s) | 37, 947, 1250 |
| Eco147I | AGGCCT | 1 cut(s) | 1441 |
| Eco32I | GATATC | 1 cut(s) | 714 |
| Eco47I | GGWCC | 4 cut(s) | 28, 650, 1328, 1706 |
| Eco57I | CTGAAG | 4 cut(s) | 320, 762, 966, 1398 |
| Eco81I | CCTNAGG | 1 cut(s) | 882 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 753, 1446 |
| EcoO109I | RGGNCCY | 1 cut(s) | 704 |
| EcoRI | GAATTC | 1 cut(s) | 848 |
| EcoRII | CCWGG | 3 cut(s) | 700, 1063, 1330 |
| EcoRV | GATATC | 1 cut(s) | 714 |
| EcoT14I | CCWWGG | 3 cut(s) | 37, 947, 1250 |
| EcoT22I | ATGCAT | 1 cut(s) | 1492 |
| EgeI | GGCGCC | 1 cut(s) | 168 |
| EheI | GGCGCC | 1 cut(s) | 168 |
| ErhI | CCWWGG | 3 cut(s) | 37, 947, 1250 |
| Esp3I | CGTCTC | 1 cut(s) | 1317 |
| FaeI | CATG | 4 cut(s) | 860, 1597, 1637, 1679 |
| FaqI | GGGAC | 4 cut(s) | 407, 496, 577, 1568 |
| FatI | CATG | 4 cut(s) | 856, 1593, 1633, 1675 |
| Fnu4HI | GCNGC | 9 cut(s) | 109, 112, 115, 118, 127, 288, 522, 936, 1256 |
| FokI | GGATG | 3 cut(s) | 1397, 1499, 1736 |
| Fsp4HI | GCNGC | 9 cut(s) | 109, 112, 115, 118, 127, 288, 522, 936, 1256 |
| FspBI | CTAG | 5 cut(s) | 401, 831, 840, 1251, 1650 |
| GlaI | GCGC | 3 cut(s) | 121, 168, 1336 |
| GluI | GCNGC | 9 cut(s) | 109, 112, 115, 118, 127, 288, 522, 936, 1256 |
| GsaI | CCCAGC | 1 cut(s) | 564 |
| HaeII | RGCGCY | 2 cut(s) | 123, 170 |
| HaeIII | GGCC | 3 cut(s) | 136, 706, 1441 |
| HapII | CCGG | 1 cut(s) | 133 |
| HhaI | GCGC | 3 cut(s) | 122, 169, 1337 |
| Hin1I | GRCGYC | 1 cut(s) | 167 |
| Hin1II | CATG | 4 cut(s) | 860, 1597, 1637, 1679 |
| Hin6I | GCGC | 3 cut(s) | 120, 167, 1335 |
| HinP1I | GCGC | 3 cut(s) | 120, 167, 1335 |
| HincII | GTYRAC | 1 cut(s) | 238 |
| HindII | GTYRAC | 1 cut(s) | 238 |
| HindIII | AAGCTT | 1 cut(s) | 341 |
| HpaII | CCGG | 1 cut(s) | 133 |
| HphI | GGTGA | 5 cut(s) | 452, 812, 1046, 1541, 1778 |
| Hpy166II | GTNNAC | 1 cut(s) | 238 |
| Hpy8I | GTNNAC | 1 cut(s) | 238 |
| HpyAV | CCTTC | 4 cut(s) | 344, 352, 990, 1076 |
| HpyCH4III | ACNGT | 5 cut(s) | 610, 919, 1015, 1123, 1522 |
| HpyCH4IV | ACGT | 1 cut(s) | 240 |
| HpyCH4V | TGCA | 5 cut(s) | 584, 656, 935, 1481, 1490 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 114, 117, 123, 126, 287, 1358, 1487 |
| HpySE526I | ACGT | 1 cut(s) | 240 |
| Hsp92I | GRCGYC | 1 cut(s) | 167 |
| Hsp92II | CATG | 4 cut(s) | 860, 1597, 1637, 1679 |
| HspAI | GCGC | 3 cut(s) | 120, 167, 1335 |
| KasI | GGCGCC | 1 cut(s) | 166 |
| Kzo9I | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| LguI | GCTCTTC | 3 cut(s) | 297, 1144, 1368 |
| LmnI | GCTCC | 4 cut(s) | 47, 535, 1066, 1129 |
| Lsp1109I | GCAGC | 9 cut(s) | 120, 123, 126, 129, 138, 299, 508, 947, 1242 |
| LweI | GCATC | 2 cut(s) | 1477, 1499 |
| MaeI | CTAG | 5 cut(s) | 401, 831, 840, 1251, 1650 |
| MaeII | ACGT | 1 cut(s) | 240 |
| MaeIII | GTNAC | 3 cut(s) | 1170, 1652, 1835 |
| MalI | GATC | 7 cut(s) | 427, 1500, 1692, 1731, 1735, 1815, 1819 |
| MbiI | CCGCTC | 2 cut(s) | 538, 1771 |
| MboI | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| MfeI | CAATTG | 1 cut(s) | 1605 |
| MflI | RGATCY | 2 cut(s) | 425, 1690 |
| MhlI | GDGCHC | 1 cut(s) | 1063 |
| MluCI | AATT | 7 cut(s) | 509, 848, 1204, 1300, 1605, 1638, 1800 |
| Mly113I | GGCGCC | 1 cut(s) | 167 |
| MlyI | GAGTC | 3 cut(s) | 218, 356, 1550 |
| MmeI | TCCRAC | 3 cut(s) | 357, 1567, 1733 |
| Mph1103I | ATGCAT | 1 cut(s) | 1492 |
| MroXI | GAANNNNTTC | 1 cut(s) | 329 |
| MseI | TTAA | 4 cut(s) | 183, 903, 1163, 1299 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1680 |
| MspCI | CTTAAG | 2 cut(s) | 902, 1162 |
| MspI | CCGG | 1 cut(s) | 133 |
| MspR9I | CCNGG | 3 cut(s) | 702, 1065, 1332 |
| MunI | CAATTG | 1 cut(s) | 1605 |
| Mva1269I | GAATGC | 1 cut(s) | 584 |
| MvaI | CCWGG | 3 cut(s) | 702, 1065, 1332 |
| MvnI | CGCG | 1 cut(s) | 1337 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 114, 117, 123, 126, 287, 1358, 1487 |
| NarI | GGCGCC | 1 cut(s) | 167 |
| NdeII | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| NlaIII | CATG | 4 cut(s) | 860, 1597, 1637, 1679 |
| NlaIV | GGNNCC | 3 cut(s) | 43, 168, 1707 |
| NmuCI | GTSAC | 3 cut(s) | 1170, 1652, 1835 |
| NsiI | ATGCAT | 1 cut(s) | 1492 |
| NspV | TTCGAA | 1 cut(s) | 295 |
| PagI | TCATGA | 1 cut(s) | 1633 |
| PasI | CCCWGGG | 1 cut(s) | 701 |
| PceI | AGGCCT | 1 cut(s) | 1441 |
| PciSI | GCTCTTC | 3 cut(s) | 297, 1144, 1368 |
| PctI | GAATGC | 1 cut(s) | 584 |
| PdmI | GAANNNNTTC | 1 cut(s) | 329 |
| PfeI | GAWTC | 8 cut(s) | 730, 752, 943, 957, 973, 1231, 1532, 1751 |
| PkrI | GCNGC | 9 cut(s) | 110, 113, 116, 119, 128, 289, 523, 937, 1257 |
| PleI | GAGTC | 3 cut(s) | 218, 356, 1550 |
| PluTI | GGCGCC | 1 cut(s) | 170 |
| PpsI | GAGTC | 3 cut(s) | 218, 356, 1550 |
| PshAI | GACNNNNGTC | 1 cut(s) | 366 |
| PsiI | TTATAA | 1 cut(s) | 1805 |
| Psp6I | CCWGG | 3 cut(s) | 700, 1063, 1330 |
| PspFI | CCCAGC | 1 cut(s) | 560 |
| PspGI | CCWGG | 3 cut(s) | 700, 1063, 1330 |
| PspN4I | GGNNCC | 3 cut(s) | 43, 168, 1707 |
| PspPI | GGNCC | 5 cut(s) | 28, 650, 704, 1328, 1706 |
| PstI | CTGCAG | 1 cut(s) | 658 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1839 |
| PsuI | RGATCY | 2 cut(s) | 425, 1690 |
| RsaI | GTAC | 2 cut(s) | 913, 1389 |
| RsaNI | GTAC | 2 cut(s) | 912, 1388 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1680 |
| SapI | GCTCTTC | 3 cut(s) | 297, 1144, 1368 |
| SaqAI | TTAA | 4 cut(s) | 183, 903, 1163, 1299 |
| SatI | GCNGC | 9 cut(s) | 109, 112, 115, 118, 127, 288, 522, 936, 1256 |
| Sau3AI | GATC | 7 cut(s) | 425, 1498, 1690, 1729, 1733, 1813, 1817 |
| Sau96I | GGNCC | 5 cut(s) | 28, 650, 704, 1328, 1706 |
| SchI | GAGTC | 3 cut(s) | 218, 356, 1550 |
| ScrFI | CCNGG | 3 cut(s) | 702, 1065, 1332 |
| SduI | GDGCHC | 1 cut(s) | 1063 |
| SfaNI | GCATC | 2 cut(s) | 1477, 1499 |
| SfcI | CTRYAG | 3 cut(s) | 654, 1443, 1822 |
| SfoI | GGCGCC | 1 cut(s) | 168 |
| SfuI | TTCGAA | 1 cut(s) | 295 |
| SinI | GGWCC | 4 cut(s) | 28, 650, 1328, 1706 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1680 |
| SmlI | CTYRAG | 3 cut(s) | 902, 1162, 1271 |
| SmoI | CTYRAG | 3 cut(s) | 902, 1162, 1271 |
| Sse9I | AATT | 7 cut(s) | 509, 848, 1204, 1300, 1605, 1638, 1800 |
| SseBI | AGGCCT | 1 cut(s) | 1441 |
| SsiI | CCGC | 4 cut(s) | 259, 538, 678, 1771 |
| SspDI | GGCGCC | 1 cut(s) | 166 |
| SspMI | CTAG | 5 cut(s) | 401, 831, 840, 1251, 1650 |
| StuI | AGGCCT | 1 cut(s) | 1441 |
| StyD4I | CCNGG | 3 cut(s) | 700, 1063, 1330 |
| StyI | CCWWGG | 3 cut(s) | 37, 947, 1250 |
| TaaI | ACNGT | 5 cut(s) | 610, 919, 1015, 1123, 1522 |
| TaiI | ACGT | 1 cut(s) | 243 |
| TaqI | TCGA | 6 cut(s) | 295, 846, 1497, 1535, 1732, 1816 |
| TasI | AATT | 7 cut(s) | 509, 848, 1204, 1300, 1605, 1638, 1800 |
| TfiI | GAWTC | 8 cut(s) | 730, 752, 943, 957, 973, 1231, 1532, 1751 |
| Tru1I | TTAA | 4 cut(s) | 183, 903, 1163, 1299 |
| Tru9I | TTAA | 4 cut(s) | 183, 903, 1163, 1299 |
| TscAI | CASTG | 2 cut(s) | 1687, 1840 |
| TseFI | GTSAC | 3 cut(s) | 1170, 1652, 1835 |
| TseI | GCWGC | 9 cut(s) | 108, 111, 114, 117, 126, 287, 521, 935, 1255 |
| Tsp45I | GTSAC | 3 cut(s) | 1170, 1652, 1835 |
| TspDTI | ATGAA | 3 cut(s) | 1578, 1650, 1674 |
| TspGWI | ACGGA | 3 cut(s) | 236, 994, 1341 |
| TspRI | CASTG | 2 cut(s) | 1687, 1840 |
| Vha464I | CTTAAG | 2 cut(s) | 902, 1162 |
| VpaK11BI | GGWCC | 4 cut(s) | 28, 650, 1328, 1706 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 753, 1446 |
| XapI | RAATTY | 1 cut(s) | 848 |
| XmaJI | CCTAGG | 1 cut(s) | 1250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 329 |
| XspI | CTAG | 5 cut(s) | 401, 831, 840, 1251, 1650 |
| Zsp2I | ATGCAT | 1 cut(s) | 1492 |