pycom15g00710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0028432
Physical Location & Seq
Reverse (-)
392856 .. 393363
508 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGTATGTAAAAAACCCTCGGAGTTTCCGAAAAATCGCTTCCAGTAATCCTTCGTTGTCTGGGTCAGTAGGTGTTGGTAAGGTTTCTAAAATGGAACCTGTAGCTTTTGTTCAGACAAGATACGAGGTTTCACGAAATCGACCCAAGAATTGTTCGACAGCCTCGTCCATGGCCGCCCTCAGCCTTCAGCTCGCCGACATCCGAGCACCCATGGTGAGAAATTTTGGGGAATGTTCTGCTACAAGTGCTCTTATTGGAAGAAATTCAAAATTCAAGTCTGGCAGCCTGGCAGGTGCTTCTCCGGAATGCACTTATAAGTGCCTCTATAACCCAGAAGCATTTTTAGTTTTTGCTGCTAAACACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.13

Weight (kDa)

9.87

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028432)

Species Orthologous Gene IDs
malus_domestica MD15G1008600.v1.1
pyrus_communis pycom15g00710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AarI CACCTGC 1 cut(s) 281
AasI GACNNNNNNGTC 1 cut(s) 163
Acc36I ACCTGC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 3 cut(s) 220, 262, 269
AcuI CTGAAG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 267, 274
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 2 cut(s) 104, 190
AluI AGCT 2 cut(s) 104, 190
Alw21I GWGCWC 2 cut(s) 208, 250
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 282, 353
ApoI RAATTY 3 cut(s) 220, 262, 269
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 226
Bbv12I GWGCWC 2 cut(s) 208, 250
BbvCI CCTCAGC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 294, 340
BciT130I CCWGG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 3 cut(s) 174, 283, 354
BlsI GCNGC 3 cut(s) 175, 284, 355
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 17, 168, 210
BsaWI WCCGGW 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 301
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 3 cut(s) 17, 168, 210
BseGI GGATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 294, 340
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 2 cut(s) 208, 250
BsiSI CCGG 1 cut(s) 302
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 208, 250
Bsp13I TCCGGA 1 cut(s) 301
Bsp19I CCATGG 2 cut(s) 168, 210
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 17, 168, 210
BssT1I CCWWGG 2 cut(s) 168, 210
Bst2UI CCWGG 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 2 cut(s) 168, 210
BstF5I GGATG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 294, 340
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 168, 210
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 192
CviAII CATG 2 cut(s) 169, 211
CviJI RGCY 6 cut(s) 104, 161, 173, 183, 190, 285
CviKI_1 RGCY 6 cut(s) 104, 161, 173, 183, 190, 285
DdeI CTNAG 1 cut(s) 179
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 168, 210
Eco57I CTGAAG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 2 cut(s) 168, 210
ErhI CCWWGG 2 cut(s) 168, 210
FaeI CATG 2 cut(s) 172, 214
FaiI YATR 5 cut(s) 6, 170, 212, 315, 327
FatI CATG 2 cut(s) 168, 210
Fnu4HI GCNGC 3 cut(s) 174, 283, 354
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 174, 283, 354
GluI GCNGC 3 cut(s) 174, 283, 354
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 302
Hin1II CATG 2 cut(s) 172, 214
HpaII CCGG 1 cut(s) 302
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 4 cut(s) 21, 29, 114, 203
Hpy188III TCNNGA 2 cut(s) 132, 302
HpyAV CCTTC 2 cut(s) 60, 194
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 172, 214
Kpn2I TCCGGA 1 cut(s) 301
LpnPI CCDG 9 cut(s) 45, 55, 111, 264, 272, 276, 299, 315, 345
Lsp1109I GCAGC 2 cut(s) 294, 340
MboII GAAGA 1 cut(s) 270
MhlI GDGCHC 2 cut(s) 208, 250
MluCI AATT 4 cut(s) 148, 220, 262, 269
MnlI CCTC 5 cut(s) 27, 118, 172, 188, 332
MroI TCCGGA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 262
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 2 cut(s) 168, 210
NlaIII CATG 2 cut(s) 172, 214
NlaIV GGNNCC 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 161
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 175, 284, 355
PsiI TTATAA 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 96
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
SatI GCNGC 3 cut(s) 174, 283, 354
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 2 cut(s) 208, 250
SetI ASST 7 cut(s) 73, 84, 100, 106, 129, 192, 295
SfcI CTRYAG 1 cut(s) 99
Sse9I AATT 4 cut(s) 148, 220, 262, 269
SsiI CCGC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 2 cut(s) 168, 210
TaqI TCGA 2 cut(s) 139, 155
TasI AATT 4 cut(s) 148, 220, 262, 269
TauI GCSGC 1 cut(s) 176
TscAI CASTG 1 cut(s) 368
TseI GCWGC 2 cut(s) 282, 353
TspRI CASTG 1 cut(s) 368
XapI RAATTY 3 cut(s) 220, 262, 269
XmnI GAANNNNTTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.