Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029459

Physical Location & Seq

Genomic Coordinates Forward (+)

970321 .. 971373

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGGAGGTTCGTAGAGAGAAATGTTGCTTACAAACCGTGGATTTGGACTACAGGAAATCACGAAATCGATTTTGTTCCTGAGCTTGGTGAAAATAAACCCTTCAAACCGTACACACAACGGTATTTTGTTCCTTACGAAGCTTGGGGTAGTACGTCTCCTCTTTCGTACTGCATCAAGAGAGCTTCAGCCTATATCATACAATTTCACAGAACTGTCTTTCGTGGTTACTTATGCATTGCAGGGAAATATACTCCTCAACACAAGTGGTTCGAGGAGGAGCTGCCGAAAGTGAACAGGACAGTGACGCCATGGCTTATTGTTCTTATGCATTCTCCACTGTATAGCAATTATGTACATCACTATATGGAAGGAGAATCCTTCAGAGTTATGTATGAGGAATGGTTCGTGGACTATAAAGTAGACATTGTCCTCGCCGGTCATGTTCATGCCTACGAACGATCTGTAAAACGGATATCAAATCTTGCGTACAACATTTCGAATGGACTATGCACTCCGGTAAGAGACCAGTCAGCCCCGGTTTACATAATCAGAAATGGAGGAAACCAAGGAGGATTGGTTACCGAAATGACAGAACCACAGCTAAGTTACTCAGCTTTCCGGGAAGCTAGCTCTGGTCATGGGATTTTCGATATAAAGAACAGAAGTCATGCATTTTTCAGTTGGCATCGGAATCAAGACGGGTATGCAGTTGAAGCTGATTCTTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

245

Amino Acids

28.51

Weight (kDa)

7.77

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	3 - 152	5e-17	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	179 - 237	1.3e-10	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029459)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g01680
rosa_multiflora	Rmu_co8351693.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	423
AcuI	CTGAAG	2 cut(s)	171, 367
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	5 cut(s)	113, 154, 170, 357, 491
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	106, 716
AluBI	AGCT	9 cut(s)	85, 143, 185, 283, 604, 617, 629, 633, 719
AluI	AGCT	9 cut(s)	85, 143, 185, 283, 604, 617, 629, 633, 719
Alw26I	GTCTC	2 cut(s)	162, 519
ApeKI	GCWGC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	539, 623
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	500
AsuNHI	GCTAGC	1 cut(s)	629
BbvI	GCAGC	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	539, 623
BcoDI	GTCTC	2 cut(s)	162, 519
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	539, 623
BmrFI	CCNGG	2 cut(s)	539, 623
BmsI	GCATC	2 cut(s)	183, 697
BmtI	GCTAGC	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	539, 623
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	38, 311, 537, 568
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	237
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	38, 311, 537, 568
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	72, 627
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	4 cut(s)	150, 246, 290, 293
BseXI	GCAGC	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	438, 518, 539, 622
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	162, 519
BsmBI	CGTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	461
Bsp19I	CCATGG	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	73, 626
BspDI	ATCGAT	1 cut(s)	69
BspOI	GCTAGC	1 cut(s)	633
BspT104I	TTCGAA	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	4 cut(s)	38, 311, 537, 568
BssMI	GATC	1 cut(s)	461
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	2 cut(s)	311, 568
Bst4CI	ACNGT	6 cut(s)	39, 111, 123, 217, 304, 342
BstACI	GRCGYC	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	3 cut(s)	81, 605, 613
BstDSI	CCRYGG	2 cut(s)	38, 311
BstEII	GGTNACC	1 cut(s)	580
BstKTI	GATC	1 cut(s)	464
BstMAI	GTCTC	2 cut(s)	162, 519
BstMBI	GATC	1 cut(s)	461
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	580
BstSCI	CCNGG	2 cut(s)	537, 621
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	2 cut(s)	38, 311
BtsIMutI	CAGTG	2 cut(s)	309, 338
Cac8I	GCNNGC	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	5 cut(s)	112, 153, 169, 356, 490
CspCI	CAANNNNNGTGG	2 cut(s)	248, 283
CviAII	CATG	5 cut(s)	312, 443, 449, 641, 671
CviQI	GTAC	5 cut(s)	112, 153, 169, 356, 490
DdeI	CTNAG	3 cut(s)	81, 605, 613
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
Eco130I	CCWWGG	2 cut(s)	311, 568
Eco31I	GGTCTC	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	171, 367
Eco91I	GGTNACC	1 cut(s)	580
EcoO65I	GGTNACC	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	311, 568
EcoT22I	ATGCAT	3 cut(s)	239, 333, 676
ErhI	CCWWGG	2 cut(s)	311, 568
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	5 cut(s)	315, 446, 452, 644, 674
FatI	CATG	5 cut(s)	311, 442, 448, 640, 670
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	1 cut(s)	284
HapII	CCGG	4 cut(s)	438, 518, 539, 622
HgaI	GACGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	5 cut(s)	315, 446, 452, 644, 674
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	3 cut(s)	377, 694, 722
HpaII	CCGG	4 cut(s)	438, 518, 539, 622
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	5 cut(s)	114, 295, 412, 424, 544
Hpy188I	TCNGA	3 cut(s)	386, 554, 693
Hpy188III	TCNNGA	4 cut(s)	62, 80, 178, 698
Hpy8I	GTNNAC	5 cut(s)	114, 295, 412, 424, 544
HpyAV	CCTTC	3 cut(s)	112, 365, 391
HpyCH4III	ACNGT	6 cut(s)	39, 111, 123, 217, 304, 342
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	174, 237, 242, 331, 513, 674, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	3 cut(s)	81, 605, 613
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	5 cut(s)	315, 446, 452, 644, 674
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	2 cut(s)	183, 697
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	4 cut(s)	227, 304, 580, 608
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MluCI	AATT	2 cut(s)	203, 349
MnlI	CCTC	8 cut(s)	171, 267, 268, 271, 391, 443, 554, 566
Mph1103I	ATGCAT	3 cut(s)	239, 333, 676
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	4 cut(s)	438, 518, 539, 622
MspR9I	CCNGG	2 cut(s)	539, 623
Mva1269I	GAATGC	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	716
NciI	CCSGG	2 cut(s)	539, 623
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	461
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	5 cut(s)	315, 446, 452, 644, 674
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	3 cut(s)	239, 333, 676
NspV	TTCGAA	1 cut(s)	500
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	377, 694, 722
PflFI	GACNNNGTC	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	621
PkrI	GCNGC	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	5 cut(s)	113, 154, 170, 357, 491
RsaNI	GTAC	5 cut(s)	112, 153, 169, 356, 490
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	539, 623
SfaNI	GCATC	2 cut(s)	183, 697
SfcI	CTRYAG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	2 cut(s)	203, 349
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	537, 621
StyI	CCWWGG	2 cut(s)	311, 568
TaaI	ACNGT	6 cut(s)	39, 111, 123, 217, 304, 342
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	4 cut(s)	69, 273, 500, 651
TasI	AATT	2 cut(s)	203, 349
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	3 cut(s)	377, 694, 722
TscAI	CASTG	2 cut(s)	309, 345
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	2 cut(s)	309, 345
Tth111I	GACNNNGTC	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	630
Zsp2I	ATGCAT	3 cut(s)	239, 333, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.