Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351693.1

Orthogroup ID

OG0029459

Physical Location & Seq

Genomic Coordinates Reverse (-)

38 .. 973

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351693.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgcagggtgaaagtataccattcaaaccatatacaaatcgcttttttgttccatacaaagcttcagatagtacatctcctctgtggtactccatcaagagagcttcagcatatatcatagtcttgtcctcttactcggcatatggaaaatatactcctcagtataagtggcttgaaaaggagttgcctaaagtgaacagaactgagacaccatggcttattgttcttgtgcattgtccaatgtatagcagctatgtgcatcattatatggaaggtgaaaccatgagggttatgtatgagcaatggttcgtggattataaagtagatgttgtctttgccggtcatgttcatgcctatgaacgatctgaaaggatatcaaacattgcatacaacataacaaatggactttgcactcccataagtgaccaatcagcgccagtttacataacaattggagatggaggaaatctagaaggattggttaccgaaatgacagagccgcagccaagctactcggcatttcgtgaggctagctttggccatgggattcttgagatcaaaaacagaagctatgcctttttcagttggcataggaatcaagatggttatgcagtagaagctgattctttatggttacgcaacagatattggaaaactactttggaaaagtcatcgtccctaactgcgttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009505 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

230

Amino Acids

26.66

Weight (kDa)

6.66

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029459)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g01680
rosa_multiflora	Rmu_co8351693.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 691
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	538
AcuI	CTGAAG	2 cut(s)	48, 90
AfaI	GTAC	2 cut(s)	73, 89
AgsI	TTSAA	2 cut(s)	25, 176
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	7 cut(s)	62, 104, 252, 510, 534, 570, 620
AluI	AGCT	7 cut(s)	62, 104, 252, 510, 534, 570, 620
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	249, 502
AspLEI	GCGC	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	20, 287
AsuNHI	GCTAGC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	261, 514
BccI	CCATC	3 cut(s)	101, 452, 596
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	470, 531
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	3 cut(s)	250, 500, 503
BlsI	GCNGC	3 cut(s)	251, 501, 504
BmsI	GCATC	1 cut(s)	268
BmtI	GCTAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	212, 541
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	2 cut(s)	308, 381
BseDI	CCNNGG	2 cut(s)	212, 541
BseMI	GCAATG	2 cut(s)	308, 381
BseMII	CTCAG	2 cut(s)	173, 195
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	2 cut(s)	69, 147
BseXI	GCAGC	2 cut(s)	261, 514
BshFI	GGCC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	661
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	362, 555
Bsp19I	CCATGG	2 cut(s)	212, 541
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	2 cut(s)	172, 196
BspOI	GCTAGC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	308, 381
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	212, 541
BssMI	GATC	2 cut(s)	362, 555
BssNAI	GTATAC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	212, 541
Bst1107I	GTATAC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	2 cut(s)	159, 204
BstDSI	CCRYGG	2 cut(s)	212, 541
BstEII	GGTNACC	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	365, 558
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	362, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	261, 514
BstZ17I	GTATAC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	540
BtgI	CCRYGG	2 cut(s)	212, 541
Cac8I	GCNNGC	1 cut(s)	532
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	72, 88
CviAII	CATG	5 cut(s)	213, 283, 344, 350, 542
CviQI	GTAC	2 cut(s)	72, 88
DdeI	CTNAG	2 cut(s)	159, 204
DpnI	GATC	2 cut(s)	364, 557
DpnII	GATC	2 cut(s)	362, 555
EaeI	YGGCCR	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	212, 541
Eco32I	GATATC	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	48, 90
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	212, 541
ErhI	CCWWGG	2 cut(s)	212, 541
FaeI	CATG	5 cut(s)	216, 286, 347, 353, 545
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	5 cut(s)	212, 282, 343, 349, 541
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	250, 500, 503
Fsp4HI	GCNGC	3 cut(s)	250, 500, 503
FspBI	CTAG	2 cut(s)	470, 531
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	3 cut(s)	250, 500, 503
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	216, 286, 347, 353, 545
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	3 cut(s)	547, 595, 623
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	2 cut(s)	20, 287
Hpy166II	GTNNAC	3 cut(s)	17, 196, 442
Hpy188I	TCNGA	2 cut(s)	67, 367
Hpy188III	TCNNGA	5 cut(s)	97, 470, 524, 551, 599
Hpy8I	GTNNAC	3 cut(s)	17, 196, 442
HpyAV	CCTTC	2 cut(s)	266, 467
HpyCH4V	TGCA	6 cut(s)	4, 232, 259, 386, 411, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	2 cut(s)	159, 204
Hsp92II	CATG	5 cut(s)	216, 286, 347, 353, 545
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	2 cut(s)	362, 555
LpnPI	CCDG	2 cut(s)	352, 450
Lsp1109I	GCAGC	2 cut(s)	261, 514
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	470, 531
MaeIII	GTNAC	3 cut(s)	422, 481, 633
MalI	GATC	2 cut(s)	364, 557
MboI	GATC	2 cut(s)	362, 555
MfeI	CAATTG	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	1 cut(s)	450
MluNI	TGGCCA	1 cut(s)	540
MnlI	CCTC	6 cut(s)	90, 139, 168, 279, 455, 520
Mox20I	TGGCCA	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	348, 354
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	617
NcoI	CCATGG	2 cut(s)	212, 541
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	2 cut(s)	362, 555
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	5 cut(s)	216, 286, 347, 353, 545
NmeAIII	GCCGAG	2 cut(s)	116, 494
NmuCI	GTSAC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	547, 595, 623
PkrI	GCNGC	3 cut(s)	251, 501, 504
PsiI	TTATAA	2 cut(s)	318, 691
PspEI	GGTNACC	1 cut(s)	481
RsaI	GTAC	2 cut(s)	73, 89
RsaNI	GTAC	2 cut(s)	72, 88
RseI	CAYNNNNRTG	2 cut(s)	348, 354
SatI	GCNGC	3 cut(s)	250, 500, 503
Sau3AI	GATC	2 cut(s)	362, 555
SetI	ASST	8 cut(s)	64, 106, 254, 277, 512, 536, 572, 622
SfaNI	GCATC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	348, 354
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	2 cut(s)	470, 531
StyI	CCWWGG	2 cut(s)	212, 541
TasI	AATT	1 cut(s)	450
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	3 cut(s)	547, 595, 623
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	249, 502
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	338, 372
XbaI	TCTAGA	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	2 cut(s)	470, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.