Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028358

Physical Location & Seq

Genomic Coordinates Forward (+)

1106869 .. 1107602

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGGCCAGACAGAAAAAAAGCTCTACCGCCAGAGAATGGAAGAGTCATTGCAGCTGAAACACTGCCTAGAAAGCCAAGTAGTATTGACGAGGGAGGTGGGAAAGCAAGGGTGCATATGCACCATGTTACTTTAAGGGCAAATGCGCAAACTAAGTACCTGGCAATCAAATGGGACCGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

62

Amino Acids

6.77

Weight (kDa)

10.12

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028358)

Species	Orthologous Gene IDs
malus_domestica	MD15G1023000.v1.1
pyrus_communis	pycom15g01920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	38
AciI	CCGC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	23, 56
AluI	AGCT	2 cut(s)	23, 56
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	5, 175
AvaII	GGWCC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	5, 175
BmiI	GGNNCC	2 cut(s)	6, 176
BmrFI	CCNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	7
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	6, 176
BsrDI	GCAATG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	7
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	5, 175
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	4 cut(s)	7, 23, 56, 76
CviKI_1	RGCY	4 cut(s)	7, 23, 56, 76
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	128
FaiI	YATR	3 cut(s)	117, 119, 126
FatI	CATG	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	53, 115, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	146
LpnPI	CCDG	4 cut(s)	21, 45, 146, 173
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	85, 89
MseI	TTAA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	117
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	6, 176
NsbI	TGCGCA	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	6, 176
PspPI	GGNCC	2 cut(s)	5, 175
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	5, 175
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	4 cut(s)	25, 58, 100, 162
SgeI	CNNG	9 cut(s)	20, 44, 81, 90, 103, 120, 137, 172, 173
SinI	GGWCC	1 cut(s)	175
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	175
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.