Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029345

Physical Location & Seq

Genomic Coordinates Forward (+)

5092342 .. 5094271

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAATCGAACGGCTCTGATTCGTCGGTGCAGCAGCAGGAGGAGCAGCAACAGAGTAATAACCAACGGCCGCAGCCGCAACAGGCTCAAGCTCAGACGACGCCGCCGCCGCCGCCGCAGCAGCAGCAGTGGATGGGGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCACCAGATGATGCCGCCGCAGCATTACGCGACGCCTCCGCCTCCGCCGCAGCACTACATGGCGTACCACCAGTACCAGCAGCAGCAGCACGTACAACACCTCCAGCAGCAGCAGTTGGGATCTAGCGGCGGCGAGAATAAGACCATCTGGGTGGGCGATTTGCACCATTGGATGGACGAGAATTACCTCCACACCTGCTTTGCTTCCACCGGCGAGATTGCCTCCATCAAGGTTATTCGCAATAAGCAGACTCTTTTATCAGAGGGCTACGGATTCGTAGAATTTTTTTCACATGCAACAGCTGAGAAGGTTCTACAGAACTACGCTGGCATTCTAATGCCCAACACAGAACAGCCCTTCCGTCTGAACTGGGCTACATTTAGCACGGGTGATAAGCGTTCAGATAATGCTCCTGATCGATCTTTCCATTTTTGTAGGAGATTTAGCCGCAGATGTTACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

212

Amino Acids

24.43

Weight (kDa)

7.18

Isoelectric Point (pI)

80.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	106 - 173	5.6e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029345)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g08770 pycom15g08180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccII	CGCG	1 cut(s)	200
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	452
AcyI	GRCGYC	2 cut(s)	101, 203
AfaI	GTAC	4 cut(s)	146, 236, 245, 264
AfiI	CCNNNNNNNGG	2 cut(s)	154, 343
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	2 cut(s)	92, 473
AluI	AGCT	2 cut(s)	92, 473
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	572
BccI	CCATC	5 cut(s)	127, 154, 323, 337, 404
BceAI	ACGGC	2 cut(s)	28, 83
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	129, 171
BmuI	ACTGGG	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	589
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	2 cut(s)	101, 203
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 343
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	241, 545
BseCI	ATCGAT	1 cut(s)	589
BseGI	GGATG	3 cut(s)	138, 144, 348
BseLI	CCNNNNNNNGG	2 cut(s)	154, 343
BseMII	CTCAG	2 cut(s)	107, 465
BseNI	ACTGG	2 cut(s)	241, 545
BseRI	GAGGAG	1 cut(s)	56
BseX3I	CGGCCG	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	589
BsiEI	CGRYCG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	149, 381
BslI	CCNNNNNNNGG	2 cut(s)	154, 343
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	290, 586, 590
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	106, 466
BspDI	ATCGAT	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	241, 545
BssAI	RCCGGY	1 cut(s)	380
BssMI	GATC	3 cut(s)	290, 586, 590
BssNI	GRCGYC	2 cut(s)	101, 203
BstACI	GRCGYC	2 cut(s)	101, 203
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	2 cut(s)	93, 474
BstF5I	GGATG	3 cut(s)	138, 144, 348
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	3 cut(s)	293, 589, 593
BstMBI	GATC	3 cut(s)	290, 586, 590
BstMCI	CGRYCG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	290
BstZI	CGGCCG	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	589
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	138, 144, 348
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	589
CseI	GACGC	2 cut(s)	109, 211
Csp6I	GTAC	4 cut(s)	145, 235, 244, 263
CviAII	CATG	2 cut(s)	229, 464
CviQI	GTAC	4 cut(s)	145, 235, 244, 263
DdeI	CTNAG	2 cut(s)	93, 474
DpnI	GATC	3 cut(s)	292, 588, 592
DpnII	GATC	3 cut(s)	290, 586, 590
EaeI	YGGCCR	1 cut(s)	68
EagI	CGGCCG	1 cut(s)	68
EciI	GGCGGA	2 cut(s)	198, 204
EclXI	CGGCCG	1 cut(s)	68
Eco52I	CGGCCG	1 cut(s)	68
FaeI	CATG	2 cut(s)	232, 467
FaiI	YATR	2 cut(s)	230, 465
FatI	CATG	2 cut(s)	228, 463
FokI	GGATG	3 cut(s)	145, 151, 355
FspBI	CTAG	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	149, 381
HgaI	GACGC	2 cut(s)	109, 211
Hin1I	GRCGYC	2 cut(s)	101, 203
Hin1II	CATG	2 cut(s)	232, 467
HinfI	GANTC	3 cut(s)	20, 421, 444
HpaII	CCGG	2 cut(s)	149, 381
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	5 cut(s)	19, 96, 433, 537, 574
Hpy188III	TCNNGA	1 cut(s)	584
Hpy99I	CGWCG	3 cut(s)	28, 103, 205
HpyAV	CCTTC	2 cut(s)	472, 538
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	6 cut(s)	4, 31, 142, 169, 334, 467
HpyF3I	CTNAG	2 cut(s)	93, 474
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	2 cut(s)	101, 203
Hsp92II	CATG	2 cut(s)	232, 467
Kzo9I	GATC	3 cut(s)	290, 586, 590
LmnI	GCTCC	2 cut(s)	43, 586
LweI	GCATC	2 cut(s)	129, 171
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	3 cut(s)	292, 588, 592
MboI	GATC	3 cut(s)	290, 586, 590
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	2 cut(s)	352, 452
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	34, 216, 222, 281, 368, 403, 427
MslI	CAYNNNNRTG	2 cut(s)	320, 506
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	149, 381
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	501
MvnI	CGCG	1 cut(s)	200
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	290, 586, 590
NlaIII	CATG	2 cut(s)	232, 467
NspI	RCATGY	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	20, 444
PflMI	CCANNNNNTGG	1 cut(s)	343
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	4 cut(s)	146, 236, 245, 264
RsaNI	GTAC	4 cut(s)	145, 235, 244, 263
RseI	CAYNNNNRTG	2 cut(s)	320, 506
Sau3AI	GATC	3 cut(s)	290, 586, 590
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	8 cut(s)	94, 264, 273, 360, 368, 405, 475, 483
SfaNI	GCATC	2 cut(s)	129, 171
SfcI	CTRYAG	1 cut(s)	485
SgrAI	CRCCGGYG	1 cut(s)	380
SmiMI	CAYNNNNRTG	2 cut(s)	320, 506
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	352, 452
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	8, 589
TasI	AATT	2 cut(s)	352, 452
TfiI	GAWTC	2 cut(s)	20, 444
TscAI	CASTG	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	456, 521
TspRI	CASTG	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	467
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.