pycom15g09620

UDP-sugar transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
6260671 .. 6261062
392 bp
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UTR
Exon/CDS
Intron
pycom15g09620.1

Sequence Viewer

Length: 264 bp
ATGGGCATTGTTCTCAACTTCACCATGTTCTTATGTACGATAGTCAACTCCGCTCTAACAACCACCATCGTTGGAGTCCTAAAAGGAGTTGGGTCGACGACCCTCGGTTTTGTACTACTGGGTGGCGTGCAAGTGCATGTTTTGAATGTGACTGGACTGGTTATCAACACAGCCGGCGGAGTTTGGTATTCGTTTGCCAAATTTCAACAGAGGAAGAGCAAGCCCGCAAAGCGGATTGCAGATGTGGAGGCTCATCGGAAATAA

Protein Analysis

88

Amino Acids

9.29

Weight (kDa)

10.39

Isoelectric Point (pI)

8.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024051)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36601 FvH4_2g36601
pyrus_communis pycom15g09620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 95
AciI CCGC 4 cut(s) 51, 177, 225, 232
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 2 cut(s) 37, 114
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 2 cut(s) 145, 206
ApoI RAATTY 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 13
BccI CCATC 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 3 cut(s) 123, 157, 162
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 231
BseNI ACTGG 3 cut(s) 123, 157, 162
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 51, 177, 225, 232
BspQI GCTCTTC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 3 cut(s) 123, 157, 162
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 4 cut(s) 128, 175, 221, 225
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 140
Cac8I GCNNGC 4 cut(s) 128, 175, 221, 225
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 2 cut(s) 36, 113
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 2 cut(s) 25, 137
CviJI RGCY 3 cut(s) 173, 223, 251
CviKI_1 RGCY 3 cut(s) 173, 223, 251
CviQI GTAC 2 cut(s) 36, 113
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 192
FaeI CATG 2 cut(s) 28, 140
FaiI YATR 3 cut(s) 26, 34, 138
FatI CATG 2 cut(s) 24, 136
FauI CCCGC 1 cut(s) 232
FblI GTMKAC 1 cut(s) 95
HapII CCGG 1 cut(s) 174
Hin1II CATG 2 cut(s) 28, 140
HincII GTYRAC 2 cut(s) 46, 96
HindII GTYRAC 2 cut(s) 46, 96
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 2 cut(s) 46, 96
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 46, 96
Hpy99I CGWCG 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 130, 136, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
Hsp92II CATG 2 cut(s) 28, 140
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 104, 138, 143, 187
MaeIII GTNAC 1 cut(s) 148
MbiI CCGCTC 1 cut(s) 53
MboII GAAGA 1 cut(s) 226
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 113, 204, 241
MroNI GCCGGC 1 cut(s) 173
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 229
NaeI GCCGGC 1 cut(s) 175
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 28, 140
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
RsaI GTAC 2 cut(s) 37, 114
RsaNI GTAC 2 cut(s) 36, 113
SalI GTCGAC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 209
SchI GAGTC 1 cut(s) 84
Sse9I AATT 1 cut(s) 200
SsiI CCGC 4 cut(s) 51, 177, 225, 232
TaqI TCGA 1 cut(s) 95
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 112
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.