pycom15g09910

COP9 signalosome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0027149
Physical Location & Seq
Reverse (-)
6457921 .. 6458880
960 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGCTAGTCACTGTCGTATACACATCAAAGATCAAAGAGAGAAACGCGGTAGAGTCTCTAAGATACATTTTCACAAACACCGTGGATGCGCAATTAGCCCAGCAGACATGGGAGCTCGAGAACAACATAAACCCCATGGACACGCCGCCGAGCGTTGCGAAGCCGAAGGTGGACACGACGGCCGACGCCGTATTCTACTACGACGAGGCAGCGCAGGCCAAGTTCCAACAGGAGAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTTAAGATCTCCGCCCTTGCGCTCTTGAAGATGGTGGTGCACGCCCGTTCTGGCGGGACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGGCGACGCCATTATCGTCATGGATGCTTTTGCTTTGCCGGTTGAAGGGACTGAGACTAGGGTTAATGCTCAGGCCGATGCGTATGAGTATATGGTGGAGTTCTCCCAGACCAACAAGCAGGCAGGGCCGGTTGGAGAATGTGGTTGGGTGGTACCATTCTCATCCGGGATATGGATGCTGGCTTTCGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000338 GO:0003002 GO:0003006 GO:0006109 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010099 GO:0010100 GO:0010387 GO:0010389 GO:0010564 GO:0010565 GO:0010604 GO:0010971 GO:0016043 GO:0019222 GO:0019538 GO:0022414 GO:0022607 GO:0030656 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0042176 GO:0042221 GO:0043170 GO:0043255 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045732 GO:0045787 GO:0045931 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051196 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051726 GO:0060255 GO:0061458 GO:0062012 GO:0065003 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090068 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751 GO:1905392 GO:1905393 GO:2000026 GO:2000030 GO:2000082
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JAB

Protein Analysis

187

Amino Acids

20.68

Weight (kDa)

4.93

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 87 - 163 1.7e-18 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71230
pyrus_communis pycom15g09910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 90
Acc65I GGTACC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 18
AccII CGCG 2 cut(s) 47, 270
AciI CCGC 4 cut(s) 47, 146, 282, 324
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 2 cut(s) 186, 372
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 3 cut(s) 352, 410, 537
AgsI TTSAA 3 cut(s) 265, 298, 410
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 2 cut(s) 117, 312
Alw26I GTCTC 2 cut(s) 60, 413
Alw44I GTGCAC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 6 cut(s) 180, 216, 243, 343, 438, 491
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 517
AspLEI GCGC 4 cut(s) 91, 214, 270, 292
AspS9I GGNCC 4 cut(s) 243, 327, 343, 491
AsuC2I CCSGG 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 117, 312
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 295, 338
BceAI ACGGC 3 cut(s) 173, 195, 382
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 60, 413
BfaI CTAG 2 cut(s) 5, 423
BglII AGATCT 1 cut(s) 276
BisI GCNGC 2 cut(s) 146, 210
BlsI GCNGC 2 cut(s) 147, 211
Bme1390I CCNGG 2 cut(s) 241, 532
Bme18I GGWCC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 4 cut(s) 243, 327, 343, 491
BmiI GGNNCC 2 cut(s) 328, 519
BmrFI CCNGG 2 cut(s) 241, 532
BmsI GCATC 4 cut(s) 76, 379, 433, 531
Bpu10I CCTNAGC 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 532
BsaHI GRCGYC 2 cut(s) 186, 372
BsaJI CCNNGG 4 cut(s) 81, 135, 239, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 410, 537
Bse118I RCCGGY 2 cut(s) 403, 493
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 4 cut(s) 81, 135, 239, 240
BseGI GGATG 4 cut(s) 91, 394, 527, 546
BseLI CCNNNNNNNGG 3 cut(s) 352, 410, 537
BseMII CTCAG 2 cut(s) 408, 449
BseSI GKGCMC 1 cut(s) 312
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 47, 270
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 6 cut(s) 182, 218, 245, 345, 440, 493
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 117, 312
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 3 cut(s) 404, 494, 531
BslFI GGGAC 2 cut(s) 340, 427
BslI CCNNNNNNNGG 3 cut(s) 352, 410, 537
BsmAI GTCTC 2 cut(s) 60, 413
BsmFI GGGAC 2 cut(s) 340, 427
BsnI GGCC 6 cut(s) 182, 218, 245, 345, 440, 493
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 117, 312
Bsp143I GATC 2 cut(s) 30, 276
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 4 cut(s) 47, 146, 282, 324
BspANI GGCC 6 cut(s) 182, 218, 245, 345, 440, 493
BspCNI CTCAG 2 cut(s) 409, 448
BspFNI CGCG 2 cut(s) 47, 270
BspLI GGNNCC 2 cut(s) 328, 519
BspT107I GGYRCC 1 cut(s) 517
BsrFI RCCGGY 2 cut(s) 403, 493
BssAI RCCGGY 2 cut(s) 403, 493
BssECI CCNNGG 4 cut(s) 81, 135, 239, 240
BssMI GATC 2 cut(s) 30, 276
BssNAI GTATAC 1 cut(s) 19
BssNI GRCGYC 2 cut(s) 186, 372
BssT1I CCWWGG 1 cut(s) 135
Bst1107I GTATAC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 13, 82
BstACI GRCGYC 2 cut(s) 186, 372
BstC8I GCNNGC 4 cut(s) 216, 312, 486, 546
BstDEI CTNAG 3 cut(s) 59, 417, 435
BstDSI CCRYGG 2 cut(s) 81, 135
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 4 cut(s) 91, 394, 527, 546
BstFNI CGCG 2 cut(s) 47, 270
BstHHI GCGC 4 cut(s) 91, 214, 270, 292
BstKTI GATC 2 cut(s) 33, 279
BstMAI GTCTC 2 cut(s) 60, 413
BstMBI GATC 2 cut(s) 30, 276
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 95, 215, 490
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 239, 530
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 47, 270
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BstZ17I GTATAC 1 cut(s) 19
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 6 cut(s) 182, 218, 245, 345, 440, 493
BtgI CCRYGG 2 cut(s) 81, 135
BtsCI GGATG 4 cut(s) 91, 394, 527, 546
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 4 cut(s) 216, 312, 486, 546
CfoI GCGC 4 cut(s) 91, 214, 270, 292
Cfr10I RCCGGY 2 cut(s) 403, 493
Cfr13I GGNCC 4 cut(s) 243, 327, 343, 491
CseI GACGC 2 cut(s) 194, 380
Csp6I GTAC 1 cut(s) 518
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviAII CATG 5 cut(s) 108, 136, 340, 349, 385
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 59, 417, 435
DpnI GATC 2 cut(s) 32, 278
DpnII GATC 2 cut(s) 30, 276
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
EciI GGCGGA 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 5 cut(s) 111, 139, 343, 352, 388
FaqI GGGAC 2 cut(s) 340, 427
FatI CATG 5 cut(s) 107, 135, 339, 348, 384
FauI CCCGC 1 cut(s) 317
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 146, 210
FokI GGATG 4 cut(s) 98, 401, 514, 553
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 146, 210
FspBI CTAG 2 cut(s) 5, 423
FspI TGCGCA 1 cut(s) 90
GlaI GCGC 4 cut(s) 90, 213, 269, 291
GluI GCNGC 2 cut(s) 146, 210
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 6 cut(s) 182, 218, 245, 345, 440, 493
HapII CCGG 3 cut(s) 404, 494, 531
HgaI GACGC 2 cut(s) 194, 380
HhaI GCGC 4 cut(s) 91, 214, 270, 292
Hin1I GRCGYC 2 cut(s) 186, 372
Hin1II CATG 5 cut(s) 111, 139, 343, 352, 388
Hin6I GCGC 4 cut(s) 89, 212, 268, 290
HinP1I GCGC 4 cut(s) 89, 212, 268, 290
HinfI GANTC 1 cut(s) 53
HpaII CCGG 3 cut(s) 404, 494, 531
Hpy166II GTNNAC 3 cut(s) 19, 172, 310
Hpy188III TCNNGA 2 cut(s) 118, 295
Hpy8I GTNNAC 3 cut(s) 19, 172, 310
Hpy99I CGWCG 5 cut(s) 181, 188, 206, 368, 374
HpyAV CCTTC 2 cut(s) 160, 404
HpyCH4III ACNGT 2 cut(s) 13, 82
HpyCH4V TGCA 2 cut(s) 310, 352
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 215, 490
HpyF3I CTNAG 3 cut(s) 59, 417, 435
Hsp92I GRCGYC 2 cut(s) 186, 372
Hsp92II CATG 5 cut(s) 111, 139, 343, 352, 388
HspAI GCGC 4 cut(s) 89, 212, 268, 290
KpnI GGTACC 1 cut(s) 521
Kzo9I GATC 2 cut(s) 30, 276
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 4 cut(s) 76, 379, 433, 531
MaeI CTAG 2 cut(s) 5, 423
MaeIII GTNAC 1 cut(s) 7
MalI GATC 2 cut(s) 32, 278
MboI GATC 2 cut(s) 30, 276
MboII GAAGA 1 cut(s) 310
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 117, 312
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 250, 478
MnlI CCTC 3 cut(s) 199, 328, 356
MseI TTAA 2 cut(s) 273, 429
MspI CCGG 3 cut(s) 404, 494, 531
MspR9I CCNGG 2 cut(s) 241, 532
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 2 cut(s) 47, 270
MwoI GCNNNNNNNGC 3 cut(s) 95, 215, 490
NciI CCSGG 1 cut(s) 532
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 30, 276
NlaIII CATG 5 cut(s) 111, 139, 343, 352, 388
NlaIV GGNNCC 2 cut(s) 328, 519
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 7
NsbI TGCGCA 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 116
PasI CCCWGGG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 530
PkrI GCNGC 2 cut(s) 147, 211
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 328, 519
PspPI GGNCC 4 cut(s) 243, 327, 343, 491
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 273, 429
SatI GCNGC 2 cut(s) 146, 210
Sau3AI GATC 2 cut(s) 30, 276
Sau96I GGNCC 4 cut(s) 243, 327, 343, 491
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 241, 532
SduI GDGCHC 2 cut(s) 117, 312
SetI ASST 3 cut(s) 117, 171, 339
SfaNI GCATC 4 cut(s) 76, 379, 433, 531
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 92
SsiI CCGC 4 cut(s) 47, 146, 282, 324
SspMI CTAG 2 cut(s) 5, 423
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 239, 530
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 13, 82
TaqI TCGA 2 cut(s) 117, 333
TaqII GACCGA 1 cut(s) 377
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 273, 429
Tru9I TTAA 2 cut(s) 273, 429
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 7
TspRI CASTG 1 cut(s) 16
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 382
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 2 cut(s) 5, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.