pycom15g14830

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029461
Physical Location & Seq
Forward (+)
10178971 .. 10180320
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGGTCGAAGACGCCGACGGGCCAACCAAACCCGAACTCATCCTTCTGGTCGACTTTTCTTCTTCTTCTGCTCTCTCTCAGAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCAACTGGTTTTCAGGAGAGGGAGAATGTCAGGAGGTACACAGAAGAGCATCAGGAAAGCACTTGGAGCACTCAAGGACACCACCACAGTTTCGTTGGCTAAAGTCAATAGTGATTACAAGGAGTTGGACATTGCCATAGTCAAAGCTACGAATCACGTTGAGCGTCCAGCTAAGGAAAAATACATTAGAGCCATTTTTGCTGCTGTTTCTGCTACAAGACCTCGTGCTGATGTCGCATACTGCATCCACGCTCTTGCAAGAAGATTAGCAAAGACACATAACTGGGCGGTATGTTGCATTGAAAACTTTAGTTGTTATTCATCGTGCTTTGAGGGAAGTGGACCCCACATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

164

Amino Acids

17.7

Weight (kDa)

9.2

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 86 - 143 3.3e-14 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029461)

Species Orthologous Gene IDs
pyrus_communis pycom15g14830
rosa_chinensis RchiOBHm_Chr4g0399671

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AciI CCGC 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 1 cut(s) 437
AluBI AGCT 2 cut(s) 281, 305
AluI AGCT 2 cut(s) 281, 305
Alw21I GWGCWC 1 cut(s) 205
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 20, 476
AvaII GGWCC 1 cut(s) 476
BauI CACGAG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 322
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 20, 476
BmiI GGNNCC 1 cut(s) 478
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 192, 387
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 144, 422
Bse3DI GCAATG 1 cut(s) 264
BseGI GGATG 2 cut(s) 39, 378
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 144, 422
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 205
BsnI GGCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 205
BspACI CCGC 1 cut(s) 422
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 488
BspLI GGNNCC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 144, 422
BssNI GRCGYC 1 cut(s) 12
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 78, 306
BstF5I GGATG 2 cut(s) 39, 378
BstMWI GCNNNNNNNGC 4 cut(s) 200, 332, 344, 368
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 2 cut(s) 39, 378
CciI TCATGA 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 20, 476
CseI GACGC 2 cut(s) 20, 287
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 489
CviJI RGCY 5 cut(s) 22, 233, 281, 305, 326
CviKI_1 RGCY 5 cut(s) 22, 233, 281, 305, 326
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 2 cut(s) 78, 306
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 476
FaeI CATG 1 cut(s) 492
FaiI YATR 5 cut(s) 272, 373, 414, 427, 490
FatI CATG 1 cut(s) 488
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 26, 365
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 22
HgaI GACGC 2 cut(s) 20, 287
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 1 cut(s) 492
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 1 cut(s) 286
Hpy166II GTNNAC 3 cut(s) 52, 173, 476
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 4 cut(s) 148, 165, 187, 489
Hpy8I GTNNAC 3 cut(s) 52, 173, 476
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 378, 392, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 332, 344, 368
HpyF3I CTNAG 2 cut(s) 78, 306
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 492
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 7 cut(s) 32, 125, 133, 150, 172, 315, 403
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 2 cut(s) 192, 387
MaeII ACGT 1 cut(s) 291
MboII GAAGA 6 cut(s) 20, 51, 54, 57, 190, 408
MhlI GDGCHC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 95, 146, 161, 366, 460
MwoI GCNNNNNNNGC 4 cut(s) 200, 332, 344, 368
NlaIII CATG 1 cut(s) 492
NlaIV GGNNCC 1 cut(s) 478
PagI TCATGA 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 2 cut(s) 20, 476
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SalI GTCGAC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 173
SatI GCNGC 1 cut(s) 336
Sau96I GGNCC 2 cut(s) 20, 476
SduI GDGCHC 1 cut(s) 205
SetI ASST 6 cut(s) 87, 172, 283, 294, 307, 358
SfaNI GCATC 2 cut(s) 192, 387
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SsiI CCGC 1 cut(s) 422
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 6, 51
TfiI GAWTC 1 cut(s) 286
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 444, 477
VpaK11BI GGWCC 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.