RchiOBHm_Chr4g0399671

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0029461
Physical Location & Seq
Forward (+)
16964110 .. 16965068
959 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37178

Sequence Viewer

Length: 282 bp
ATGGGTACATTCTCTGGCTTTAGAAAGGCTTATGGAGCTTTGAAGGACTCTACCAAGGTTGGCCTTATCAAGGTCAACAGCGAATTCAAGGATTTGGATATTGCCACTGTGAAGGCCACAAGTCACGTTGAGTGCCCTCCGAAAGAGCGTCATGTCCGAAAGATTTTCTCTGCAACATCGGTGGTTCGCCCGCGAGCAGATGTGGCATATTGCATTCATGCCCTGGGCAAGAGATTGTCCAAGACACGGAGTTGCCATAAAGACATTGATAGTTATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

93

Amino Acids

10.33

Weight (kDa)

9.79

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 31 - 85 5.3e-13 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029461)

Species Orthologous Gene IDs
pyrus_communis pycom15g14830
rosa_chinensis RchiOBHm_Chr4g0399671

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 193
AciI CCGC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 70, 246
AgsI TTSAA 2 cut(s) 43, 88
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AoxI GGCC 2 cut(s) 61, 114
ApoI RAATTY 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 54, 222, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 246
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 54, 222, 223
BseLI CCNNNNNNNGG 2 cut(s) 70, 246
BseSI GKGCMC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 2 cut(s) 63, 116
BslI CCNNNNNNNGG 2 cut(s) 70, 246
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 2 cut(s) 63, 116
Bsp1286I GDGCHC 1 cut(s) 137
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 63, 116
BspFNI CGCG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 54, 222, 223
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 191, 195
BstENI CCTNNNNNAGG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 35, 203
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 137
BstUI CGCG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 63, 116
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 191, 195
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 2 cut(s) 152, 218
CviJI RGCY 5 cut(s) 18, 29, 38, 63, 116
CviKI_1 RGCY 5 cut(s) 18, 29, 38, 63, 116
CviQI GTAC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 155, 221
FaiI YATR 6 cut(s) 33, 153, 208, 219, 258, 280
FatI CATG 2 cut(s) 151, 217
FauI CCCGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 63, 116
HgaI GACGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 155, 221
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 141, 158
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 37, 106
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 173, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 203
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 155, 221
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 2 cut(s) 209, 236
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 35, 203
NlaIII CATG 2 cut(s) 155, 221
NmuCI GTSAC 1 cut(s) 122
PasI CCCWGGG 1 cut(s) 223
PctI GAATGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 137
SetI ASST 4 cut(s) 40, 60, 75, 129
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 83
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 206, 267
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 112
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.