pycom15g17190

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
12114942 .. 12115343
402 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17190.1

Sequence Viewer

Length: 402 bp
ATGGTGGAGTTTCGCTGCTACAAGAAAATGAATGATGATCTGGTCAGCTACGTATTCACATGGAGCTTCTTCAATGGTTGCTATTTAATGTTTTTTTTTTTTTTTTTTTCAATCTTAAAAATTAGAAAAAGGAAATTGAAATTGAAGATTCCCTATAAACTCAGGCCGTTGTTGCGTGCTTCTCAAAAACCAAAATCAAGCGAGTTCTGCTGGAGGGAGGTTGACATCGAAACCTGCGACGCCGCGAGGAAGATCGTTCTGTTTCAAATCGACCACCGAGGACGAGTCCGAGTCGCTCTGGGCATCACCGGCAAAACCACCAACACCAACGGCGTGGAGATCATGCTAGTGGAAGTTGGGCTGATCGAATGTCAACCGTGGTTCTTGACCATACTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.79

Weight (kDa)

9.64

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029287)

Species Orthologous Gene IDs
pyrus_communis pycom05g28750 pycom15g17190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AccII CGCG 1 cut(s) 245
AciI CCGC 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 240
AgsI TTSAA 5 cut(s) 73, 111, 139, 145, 266
AluBI AGCT 2 cut(s) 48, 66
AluI AGCT 2 cut(s) 48, 66
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 298
BbvI GCAGC 1 cut(s) 2
BceAI ACGGC 2 cut(s) 151, 346
BfaI CTAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 2 cut(s) 16, 243
BlsI GCNGC 2 cut(s) 17, 244
BmsI GCATC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 277, 377
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 277, 377
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 2
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 309
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 4 cut(s) 37, 252, 339, 363
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 277, 377
BssMI GATC 4 cut(s) 37, 252, 339, 363
BssNI GRCGYC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 4 cut(s) 40, 255, 342, 366
BstMBI GATC 4 cut(s) 37, 252, 339, 363
BstMWI GCNNNNNNNGC 3 cut(s) 172, 207, 309
BstSNI TACGTA 1 cut(s) 52
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 2
BstXI CCANNNNNNTGG 1 cut(s) 334
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 308
CseI GACGC 1 cut(s) 248
CviAII CATG 2 cut(s) 60, 343
CviJI RGCY 4 cut(s) 48, 66, 166, 361
CviKI_1 RGCY 4 cut(s) 48, 66, 166, 361
DdeI CTNAG 1 cut(s) 161
DpnI GATC 4 cut(s) 39, 254, 341, 365
DpnII GATC 4 cut(s) 37, 252, 339, 363
Eco105I TACGTA 1 cut(s) 52
FaeI CATG 2 cut(s) 63, 346
FaiI YATR 4 cut(s) 61, 156, 344, 392
FatI CATG 2 cut(s) 59, 342
Fnu4HI GCNGC 2 cut(s) 16, 243
Fsp4HI GCNGC 2 cut(s) 16, 243
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 16, 243
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 63, 346
HincII GTYRAC 2 cut(s) 223, 374
HindII GTYRAC 2 cut(s) 223, 374
HinfI GANTC 3 cut(s) 148, 285, 291
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 223, 374
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 2 cut(s) 223, 374
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 207, 309
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 63, 346
Kzo9I GATC 4 cut(s) 37, 252, 339, 363
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 26, 148, 196, 247, 284, 322, 380
Lsp1109I GCAGC 1 cut(s) 2
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 51
MalI GATC 4 cut(s) 39, 254, 341, 365
MboI GATC 4 cut(s) 37, 252, 339, 363
MboII GAAGA 3 cut(s) 61, 157, 262
MluCI AATT 3 cut(s) 120, 134, 140
MlyI GAGTC 2 cut(s) 294, 300
MnlI CCTC 4 cut(s) 207, 211, 240, 272
MseI TTAA 3 cut(s) 86, 116, 400
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 172, 207, 309
NdeII GATC 4 cut(s) 37, 252, 339, 363
NlaIII CATG 2 cut(s) 63, 346
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 2 cut(s) 17, 244
PleI GAGTC 2 cut(s) 293, 299
PpsI GAGTC 2 cut(s) 293, 299
Ppu21I YACGTR 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 3 cut(s) 86, 116, 400
SatI GCNGC 2 cut(s) 16, 243
Sau3AI GATC 4 cut(s) 37, 252, 339, 363
SchI GAGTC 2 cut(s) 294, 300
SetI ASST 5 cut(s) 50, 54, 68, 222, 236
SfaNI GCATC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 347
SnaBI TACGTA 1 cut(s) 52
Sse9I AATT 3 cut(s) 120, 134, 140
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 228, 270, 366
TasI AATT 3 cut(s) 120, 134, 140
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 86, 116, 400
Tru9I TTAA 3 cut(s) 86, 116, 400
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 44
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.