pycom15g17360

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0022345
Physical Location & Seq
Reverse (-)
12246763 .. 12248850
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2088 bp
ATGAAAGCTAGGCACAGTCTCCGTGGCGCCATAGACCTATTGTTCTCGCGCGGCAGCGCCACCGCCGAGACCTACACGCGGCTCGTGCTCAAATGCGTTCGAGCCAACGATGTTGCCGCAGCGAAGAGGTTGCAATCTCACATGGACCTTCACTCGTTTCAGCCCACCAAGACTTTCGTCCATAACAGGATCCTCCAGCTCTATGCAAAATACGGAAATCTTGCTGACGCCCGCAACCTGTTCGACAAAATGCCCAAGAGAGACATTTACTCGTGGAATTCCATGCTTTCTGCTTATGCGAAATCCGGGTCCCTTGAGGAATTGGGGACAATGTTTGATCAGATGCCTTCGCCGGATTTGGTCTCGTACAATACGGTGATTGCTGGTGCTGTGGCTAATGGGTGTTTGAGCAAGGCGTTGGAGGCTTTTGTGAAAATGCAAGAAGAAGGACTCGAGCCTTCAGAGCATACTTTTGTGAGCATGTTGCAAGCTTGTACCAGATTGCTGAATTTTAGGATTGGGAAGCAAATTCATGGGAGAGTGGTTGTTCGTAATTTGGAAGGCAATGAGTTTCTTTTGAATGCATTGATCGATATGTACGCCAAGTGCAGTGGCATTGATCAGGCTCGGTGGTTGTTTGATTGGTTGGTTGATAAGGATGTGGTGTCCTGGAATTTGATGATTTTCAGGTATTTGAAAAATGGGCAGCCTGAAAAATGCATTGATTTGTTTCGTGCAATGCAAGCATCAGGTTTGAAGCCTGACCAGGTTGCGGTGTCAAATGTTATCAGTGCTTACTTTCAAACCGGAAATATAGTAGAAGCAAAGAAGGAATTTGATGGGATCAAGGAGAAGGATAAGATTTGTTGGACAACAATGATAGTAGGATATGCGCAGGTTGGCAGAGAAGAGGATGCTTTAATATTGTTCGGTAAGATGCTATTGGAAAATGTCAGGCCTGATAGTTTTACCATCTCAAGTATAGTTAGTACCTGTGCAAAGTTGTCGTATTTGTATCATGGACAGGTTGTTCATGGAAAGGCAGTGCATATGGGAGTCGTTAATAATTTGCTTGTGTCTAGTGCTCTGGTTGATATGTATTGCAAATGTGGAGTTACTGAAGATGCTTGTGTGGTTTTTGAATTGATGCCGTCACGGAATGTGGTTTCTTGGAATGCTTTGATTACAGGATATGCACAAAATGGGAAGGACCTAGAAGCCTTAGCCCTATATGAGAACATGCTACAAGAAGACATAAAGCCAAATAATGTTACTTTCGTAGGTGTTTTATCTGCTTGTGTCCATGCTAATTTGATTGAAGAAGGACAGAAGTATTTCGATTCAATAAGTGAACGAAGTGGTACGGCTCCCACTATGGATCATTATGCATGTATGGTGTGTCTCTTTGGCCAATCAGGTTGCATAAACAAAGCAGTATGTCTTATTGAAAGTATGCCTTATGAACCGAATAGTTTGATTTGGTCGACTCTTCTATCTGTTTGCGCAGTGAAAGGTGACATTGAACATGCCGAGATAGCAGCTAAGCATCTCTTTAAATTTGAGCCACTCGGTGCTGGACCATACATCATACTCTCCAACATGTATGCTACTTCTGGAAGATGGGAAGACGTGGCACGTATAAGGTCTCTCATGAAGGACAAGAATGTCAAGAAGTTTCCTGCTTACAGTTGGATTGAGATTGAAAACAATGTTCACAAATTTTCATCAGAAGACCGAACTCATCCAGAAACACAACAAATTTATGAGGAACTAAACAAACTGATAAGGAAACTGCAGGAATCTGGGTTTACTCCCAACACGAAACTGGTTCTTCATAACGTTGGGGAGGAGGAGAAGTTTGAGTCCATCTGTTATCACAGCGAGAAACTTGCTCTTGCATTTGGTTTAATCAAAAAACCTAATGCAAGGATACCCATAAGGATCATAAAGAACGTCCGTGTTTGCGGAGATTGCCATGAGTTTATGAAGCTTGTGTCTCAAGCTACTGGAAGGGCTATCATCTTAAGAGATTCAAAAAGGTTTCACCATTTTAATGATGGGAATTGCTCCTGCAAGAACTGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

696

Amino Acids

78.21

Weight (kDa)

7.93

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 118 - 166 2.8e-11 PPR repeat family
PPR_2 PF13041 219 - 266 4.1e-10 PPR repeat family
PPR PF01535 222 - 252 2.4e-06 PPR repeat
PPR_2 PF13041 286 - 334 2.7e-08 PPR repeat family
PPR_2 PF13041 386 - 434 4.2e-12 PPR repeat family
PPR_3 PF13812 387 - 434 2.1e-06 Pentatricopeptide repeat domain
PPR PF01535 389 - 418 2.5e-06 PPR repeat
E_motif PF20431 506 - 566 6.4e-19 E motif
Eplus_motif PF20430 571 - 598 4.5e-08 E+ motif
DYW_deaminase PF14432 602 - 695 4.3e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022345)

Species Orthologous Gene IDs
malus_domestica MD15G1193800.v1.1
prunus_persica Prupe.7G222600_v2.0.a1 Prupe.7G222600_v2.0.a1
pyrus_communis pycom15g17360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1664
Acc16I TGCGCA 2 cut(s) 894, 1504
Acc36I ACCTGC 1 cut(s) 886
AccB1I GGYRCC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 1484
AccII CGCG 3 cut(s) 49, 51, 79
AciI CCGC 7 cut(s) 51, 63, 79, 117, 232, 773, 1965
AclI AACGTT 1 cut(s) 1839
AclWI GGATC 5 cut(s) 184, 197, 851, 1386, 1949
AcoI YGGCCR 1 cut(s) 1408
AcsI RAATTY 8 cut(s) 277, 508, 528, 673, 833, 1556, 1718, 1758
AcuI CTGAAG 2 cut(s) 444, 1140
AcyI GRCGYC 2 cut(s) 27, 228
AdeI CACNNNGTG 1 cut(s) 1571
AfaI GTAC 5 cut(s) 368, 496, 599, 991, 1363
AfiI CCNNNNNNNGG 2 cut(s) 78, 772
AflII CTTAAG 1 cut(s) 2023
AflIII ACRYGT 1 cut(s) 1599
AjiI CACGTC 1 cut(s) 1630
AjnI CCWGG 2 cut(s) 668, 765
AloI GAACNNNNNNTCC 2 cut(s) 1014, 1046
AluBI AGCT 6 cut(s) 8, 199, 491, 1541, 1990, 2003
AluI AGCT 6 cut(s) 8, 199, 491, 1541, 1990, 2003
Alw21I GWGCWC 2 cut(s) 90, 1087
Alw26I GTCTC 7 cut(s) 23, 62, 255, 367, 1406, 1650, 2001
AlwI GGATC 5 cut(s) 184, 197, 851, 1386, 1949
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 2 cut(s) 956, 1408
ApeKI GCWGC 4 cut(s) 54, 119, 706, 1538
ApoI RAATTY 8 cut(s) 277, 508, 528, 673, 833, 1556, 1718, 1758
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
Asp700I GAANNNNTTC 1 cut(s) 1334
AspLEI GCGC 5 cut(s) 29, 51, 59, 895, 1505
AspS9I GGNCC 4 cut(s) 145, 309, 1210, 1577
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 388, 1526, 2036
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 4 cut(s) 145, 309, 1210, 1577
BalI TGGCCA 1 cut(s) 1410
BamHI GGATCC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 26
BauI CACGAG 2 cut(s) 83, 271
BbsI GAAGAC 3 cut(s) 1257, 1632, 1737
Bbv12I GWGCWC 2 cut(s) 90, 1087
BbvI GCAGC 4 cut(s) 66, 131, 718, 1550
BccI CCATC 5 cut(s) 833, 980, 1614, 1874, 2051
BceAI ACGGC 2 cut(s) 1135, 1380
BcgI CGANNNNNNTGC 8 cut(s) 112, 146, 223, 257, 987, 1021, 1871, 1905
BciT130I CCWGG 2 cut(s) 670, 767
BciVI GTATCC 1 cut(s) 1923
BclI TGATCA 2 cut(s) 337, 619
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 7 cut(s) 23, 62, 255, 367, 1406, 1650, 2001
BfaI CTAG 3 cut(s) 9, 1080, 1214
BfmI CTRYAG 1 cut(s) 1793
BfoI RGCGCY 2 cut(s) 30, 60
BfrI CTTAAG 1 cut(s) 2023
BfuAI ACCTGC 1 cut(s) 886
BfuI GTATCC 1 cut(s) 1923
BisI GCNGC 7 cut(s) 52, 55, 80, 117, 120, 707, 1539
BlpI GCTNAGC 1 cut(s) 1542
BlsI GCNGC 7 cut(s) 53, 56, 81, 118, 121, 708, 1540
Bme1390I CCNGG 3 cut(s) 307, 670, 767
Bme18I GGWCC 4 cut(s) 145, 309, 1210, 1577
BmeT110I CYCGRG 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 1630
BmgT120I GGNCC 4 cut(s) 145, 309, 1210, 1577
BmiI GGNNCC 5 cut(s) 28, 191, 310, 311, 1368
BmrFI CCNGG 3 cut(s) 307, 670, 767
BmsI GCATC 7 cut(s) 333, 755, 904, 927, 1114, 1137, 1555
BoxI GACNNNNGTC 1 cut(s) 176
BpiI GAAGAC 3 cut(s) 1257, 1632, 1737
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 1222
Bpu1102I GCTNAGC 1 cut(s) 1542
BpuEI CTTGAG 3 cut(s) 335, 961, 1983
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 591
BsaAI YACGTR 1 cut(s) 1637
BsaHI GRCGYC 2 cut(s) 27, 228
BsaI GGTCTC 3 cut(s) 62, 367, 1650
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 1841, 1871
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 772
Bse1I ACTGG 2 cut(s) 1830, 2011
Bse3DI GCAATG 2 cut(s) 571, 744
BseBI CCWGG 2 cut(s) 670, 767
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 664, 919, 1741
BseLI CCNNNNNNNGG 2 cut(s) 78, 772
BseMI GCAATG 2 cut(s) 571, 744
BseNI ACTGG 2 cut(s) 1830, 2011
BseRI GAGGAG 2 cut(s) 1862, 1865
BseXI GCAGC 4 cut(s) 66, 131, 718, 1550
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 3 cut(s) 49, 51, 79
BshFI GGCC 2 cut(s) 958, 1410
BshNI GGYRCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 90, 1087
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 3 cut(s) 306, 353, 807
BslFI GGGAC 2 cut(s) 295, 340
BslI CCNNNNNNNGG 2 cut(s) 78, 772
BsmAI GTCTC 7 cut(s) 23, 62, 255, 367, 1406, 1650, 2001
BsmFI GGGAC 2 cut(s) 295, 340
BsmI GAATGC 2 cut(s) 586, 1180
BsnI GGCC 2 cut(s) 958, 1410
Bso31I GGTCTC 3 cut(s) 62, 367, 1650
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 90, 1087
Bsp143I GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
Bsp1720I GCTNAGC 1 cut(s) 1542
BspACI CCGC 7 cut(s) 51, 63, 79, 117, 232, 773, 1965
BspANI GGCC 2 cut(s) 958, 1410
BspDI ATCGAT 1 cut(s) 591
BspFNI CGCG 3 cut(s) 49, 51, 79
BspHI TCATGA 1 cut(s) 1650
BspLI GGNNCC 5 cut(s) 28, 191, 310, 311, 1368
BspMAI CTGCAG 1 cut(s) 1797
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 5 cut(s) 184, 197, 851, 1386, 1949
BspT107I GGYRCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 2023
BspTNI GGTCTC 3 cut(s) 62, 367, 1650
BsrDI GCAATG 2 cut(s) 571, 744
BsrI ACTGG 2 cut(s) 1830, 2011
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
BssNI GRCGYC 2 cut(s) 27, 228
BssSI CACGAG 2 cut(s) 83, 271
Bst2BI CACGAG 2 cut(s) 83, 271
Bst2UI CCWGG 2 cut(s) 670, 767
Bst4CI ACNGT 3 cut(s) 17, 376, 1688
Bst6I CTCTTC 3 cut(s) 119, 903, 1494
BstACI GRCGYC 2 cut(s) 27, 228
BstAFI CTTAAG 1 cut(s) 2023
BstAPI GCANNNNNTGC 1 cut(s) 2079
BstBAI YACGTR 1 cut(s) 1637
BstC8I GCNNGC 3 cut(s) 232, 489, 744
BstDEI CTNAG 2 cut(s) 1222, 1542
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 664, 919, 1741
BstFNI CGCG 3 cut(s) 49, 51, 79
BstH2I RGCGCY 2 cut(s) 30, 60
BstHHI GCGC 5 cut(s) 29, 51, 59, 895, 1505
BstKTI GATC 7 cut(s) 192, 340, 591, 622, 846, 1381, 1944
BstMAI GTCTC 7 cut(s) 23, 62, 255, 367, 1406, 1650, 2001
BstMBI GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
BstMWI GCNNNNNNNGC 7 cut(s) 85, 422, 463, 743, 1535, 1971, 2079
BstNI CCWGG 2 cut(s) 670, 767
BstNSI RCATGY 5 cut(s) 484, 1243, 1392, 1529, 1603
BstPAI GACNNNNGTC 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 305, 668, 765
BstSFI CTRYAG 1 cut(s) 1793
BstUI CGCG 3 cut(s) 49, 51, 79
BstV1I GCAGC 4 cut(s) 66, 131, 718, 1550
BstV2I GAAGAC 3 cut(s) 1257, 1632, 1737
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 591
BsuI GTATCC 1 cut(s) 1923
BsuRI GGCC 2 cut(s) 958, 1410
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 1630
BtsCI GGATG 3 cut(s) 664, 919, 1741
BtsI GCAGTG 3 cut(s) 616, 1050, 1512
BtsIMutI CAGTG 4 cut(s) 616, 796, 1050, 1512
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 3 cut(s) 232, 489, 744
CciI TCATGA 1 cut(s) 1650
CfoI GCGC 5 cut(s) 29, 51, 59, 895, 1505
Cfr13I GGNCC 4 cut(s) 145, 309, 1210, 1577
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 765
Csp6I GTAC 5 cut(s) 367, 495, 598, 990, 1362
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviQI GTAC 5 cut(s) 367, 495, 598, 990, 1362
DdeI CTNAG 2 cut(s) 1222, 1542
DinI GGCGCC 1 cut(s) 28
DpnI GATC 7 cut(s) 191, 339, 590, 621, 845, 1380, 1943
DpnII GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
DraI TTTAAA 1 cut(s) 1555
DraIII CACNNNGTG 1 cut(s) 1571
DrdI GACNNNNNNGTC 1 cut(s) 1664
DseDI GACNNNNNNGTC 1 cut(s) 1664
EaeI YGGCCR 1 cut(s) 1408
Eam1104I CTCTTC 3 cut(s) 119, 903, 1494
EarI CTCTTC 3 cut(s) 119, 903, 1494
Eco147I AGGCCT 1 cut(s) 958
Eco31I GGTCTC 3 cut(s) 62, 367, 1650
Eco47I GGWCC 4 cut(s) 145, 309, 1210, 1577
Eco57I CTGAAG 2 cut(s) 444, 1140
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 309, 1210
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 668, 765
EcoT22I ATGCAT 3 cut(s) 586, 722, 1390
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
FalI AAGNNNNNCTT 4 cut(s) 1441, 1473, 1535, 1567
FaqI GGGAC 2 cut(s) 295, 340
FauI CCCGC 1 cut(s) 239
FauNDI CATATG 1 cut(s) 1050
FbaI TGATCA 2 cut(s) 337, 619
FblI GTMKAC 1 cut(s) 1484
Fnu4HI GCNGC 7 cut(s) 52, 55, 80, 117, 120, 707, 1539
FokI GGATG 3 cut(s) 671, 926, 1728
Fsp4HI GCNGC 7 cut(s) 52, 55, 80, 117, 120, 707, 1539
FspBI CTAG 3 cut(s) 9, 1080, 1214
FspI TGCGCA 2 cut(s) 894, 1504
GlaI GCGC 5 cut(s) 28, 50, 58, 894, 1504
GluI GCNGC 7 cut(s) 52, 55, 80, 117, 120, 707, 1539
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 2 cut(s) 30, 60
HaeIII GGCC 2 cut(s) 958, 1410
HapII CCGG 3 cut(s) 306, 353, 807
HgaI GACGC 1 cut(s) 236
HhaI GCGC 5 cut(s) 29, 51, 59, 895, 1505
Hin1I GRCGYC 2 cut(s) 27, 228
Hin6I GCGC 5 cut(s) 27, 49, 57, 893, 1503
HinP1I GCGC 5 cut(s) 27, 49, 57, 893, 1503
HincII GTYRAC 1 cut(s) 1485
HindII GTYRAC 1 cut(s) 1485
HindIII AAGCTT 2 cut(s) 489, 1988
HinfI GANTC 7 cut(s) 450, 1056, 1340, 1486, 1799, 1862, 2030
HpaII CCGG 3 cut(s) 306, 353, 807
HphI GGTGA 3 cut(s) 388, 1526, 2036
Hpy166II GTNNAC 4 cut(s) 1352, 1485, 1714, 1809
Hpy188I TCNGA 3 cut(s) 342, 463, 1729
Hpy188III TCNNGA 4 cut(s) 1614, 1651, 1669, 1745
Hpy8I GTNNAC 4 cut(s) 1352, 1485, 1714, 1809
HpyCH4III ACNGT 3 cut(s) 17, 376, 1688
HpyCH4IV ACGT 4 cut(s) 1629, 1636, 1839, 1953
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 422, 463, 743, 1535, 1971, 2079
HpyF3I CTNAG 2 cut(s) 1222, 1542
HpySE526I ACGT 4 cut(s) 1629, 1636, 1839, 1953
Hsp92I GRCGYC 2 cut(s) 27, 228
HspAI GCGC 5 cut(s) 27, 49, 57, 893, 1503
KasI GGCGCC 1 cut(s) 26
KflI GGGWCCC 1 cut(s) 309
Ksp22I TGATCA 2 cut(s) 337, 619
Kzo9I GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
LmnI GCTCC 2 cut(s) 1372, 2072
Lsp1109I GCAGC 4 cut(s) 66, 131, 718, 1550
LweI GCATC 7 cut(s) 333, 755, 904, 927, 1114, 1137, 1555
MabI ACCWGGT 1 cut(s) 765
MaeI CTAG 3 cut(s) 9, 1080, 1214
MaeII ACGT 4 cut(s) 1629, 1636, 1839, 1953
MaeIII GTNAC 4 cut(s) 1114, 1152, 1270, 1514
MalI GATC 7 cut(s) 191, 339, 590, 621, 845, 1380, 1943
MboI GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 2 cut(s) 90, 1087
MlsI TGGCCA 1 cut(s) 1410
MluNI TGGCCA 1 cut(s) 1410
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 4 cut(s) 444, 1065, 1480, 1871
MmeI TCCRAC 4 cut(s) 399, 848, 1620, 1670
MnlI CCTC 8 cut(s) 120, 203, 310, 415, 904, 1759, 1840, 1843
Mox20I TGGCCA 1 cut(s) 1410
Mph1103I ATGCAT 3 cut(s) 586, 722, 1390
MroXI GAANNNNTTC 1 cut(s) 1334
MscI TGGCCA 1 cut(s) 1410
MseI TTAA 6 cut(s) 920, 1062, 1554, 1907, 2024, 2052
MslI CAYNNNNRTG 1 cut(s) 2052
Msp20I TGGCCA 1 cut(s) 1410
MspCI CTTAAG 1 cut(s) 2023
MspI CCGG 3 cut(s) 306, 353, 807
MspR9I CCNGG 3 cut(s) 307, 670, 767
Mva1269I GAATGC 2 cut(s) 586, 1180
MvaI CCWGG 2 cut(s) 670, 767
MvnI CGCG 3 cut(s) 49, 51, 79
MwoI GCNNNNNNNGC 7 cut(s) 85, 422, 463, 743, 1535, 1971, 2079
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 1 cut(s) 307
NdeI CATATG 1 cut(s) 1050
NdeII GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
NlaIV GGNNCC 5 cut(s) 28, 191, 310, 311, 1368
NmeAIII GCCGAG 2 cut(s) 91, 1555
NmuCI GTSAC 2 cut(s) 1152, 1514
NsbI TGCGCA 2 cut(s) 894, 1504
NsiI ATGCAT 3 cut(s) 586, 722, 1390
NspI RCATGY 5 cut(s) 484, 1243, 1392, 1529, 1603
PaeR7I CTCGAG 1 cut(s) 452
PagI TCATGA 1 cut(s) 1650
PceI AGGCCT 1 cut(s) 958
PciI ACATGT 1 cut(s) 1599
PctI GAATGC 2 cut(s) 586, 1180
PdmI GAANNNNTTC 1 cut(s) 1334
PfeI GAWTC 3 cut(s) 1340, 1799, 2030
PfoI TCCNGGA 1 cut(s) 668
PkrI GCNGC 7 cut(s) 53, 56, 81, 118, 121, 708, 1540
PleI GAGTC 4 cut(s) 444, 1064, 1480, 1870
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 4 cut(s) 444, 1064, 1480, 1870
Ppu21I YACGTR 1 cut(s) 1637
PpuMI RGGWCCY 2 cut(s) 309, 1210
PscI ACATGT 1 cut(s) 1599
PshAI GACNNNNGTC 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 1839
Psp5II RGGWCCY 2 cut(s) 309, 1210
Psp6I CCWGG 2 cut(s) 668, 765
PspGI CCWGG 2 cut(s) 668, 765
PspN4I GGNNCC 5 cut(s) 28, 191, 310, 311, 1368
PspPI GGNCC 4 cut(s) 145, 309, 1210, 1577
PspPPI RGGWCCY 2 cut(s) 309, 1210
PspXI VCTCGAGB 1 cut(s) 452
PstI CTGCAG 1 cut(s) 1797
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 5 cut(s) 368, 496, 599, 991, 1363
RsaNI GTAC 5 cut(s) 367, 495, 598, 990, 1362
RseI CAYNNNNRTG 1 cut(s) 2052
SalI GTCGAC 1 cut(s) 1483
SaqAI TTAA 6 cut(s) 920, 1062, 1554, 1907, 2024, 2052
SatI GCNGC 7 cut(s) 52, 55, 80, 117, 120, 707, 1539
Sau3AI GATC 7 cut(s) 189, 337, 588, 619, 843, 1378, 1941
Sau96I GGNCC 4 cut(s) 145, 309, 1210, 1577
SchI GAGTC 4 cut(s) 444, 1065, 1480, 1871
ScrFI CCNGG 3 cut(s) 307, 670, 767
SduI GDGCHC 2 cut(s) 90, 1087
SexAI ACCWGGT 1 cut(s) 765
SfaNI GCATC 7 cut(s) 333, 755, 904, 927, 1114, 1137, 1555
SfcI CTRYAG 1 cut(s) 1793
SfoI GGCGCC 1 cut(s) 28
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 4 cut(s) 145, 309, 1210, 1577
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 2052
SmlI CTYRAG 5 cut(s) 314, 452, 976, 1998, 2023
SmoI CTYRAG 5 cut(s) 314, 452, 976, 1998, 2023
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 7 cut(s) 51, 63, 79, 117, 232, 773, 1965
SspDI GGCGCC 1 cut(s) 26
SspI AATATT 1 cut(s) 924
SspMI CTAG 3 cut(s) 9, 1080, 1214
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 3 cut(s) 305, 668, 765
TaaI ACNGT 3 cut(s) 17, 376, 1688
TaiI ACGT 4 cut(s) 1632, 1639, 1842, 1956
TaqI TCGA 6 cut(s) 100, 243, 453, 591, 1338, 1484
TaqII GACCGA 1 cut(s) 1749
TauI GCSGC 3 cut(s) 54, 82, 119
TfiI GAWTC 3 cut(s) 1340, 1799, 2030
Tru1I TTAA 6 cut(s) 920, 1062, 1554, 1907, 2024, 2052
Tru9I TTAA 6 cut(s) 920, 1062, 1554, 1907, 2024, 2052
TscAI CASTG 4 cut(s) 616, 796, 1050, 1512
TseFI GTSAC 2 cut(s) 1152, 1514
TseI GCWGC 4 cut(s) 54, 119, 706, 1538
Tsp45I GTSAC 2 cut(s) 1152, 1514
TspDTI ATGAA 8 cut(s) 17, 521, 1022, 1476, 1667, 1713, 1823, 2000
TspGWI ACGGA 4 cut(s) 11, 228, 1171, 1946
TspRI CASTG 4 cut(s) 616, 796, 1050, 1512
Vha464I CTTAAG 1 cut(s) 2023
VpaK11BI GGWCC 4 cut(s) 145, 309, 1210, 1577
XapI RAATTY 8 cut(s) 277, 508, 528, 673, 833, 1556, 1718, 1758
XceI RCATGY 5 cut(s) 484, 1243, 1392, 1529, 1603
XcmI CCANNNNNNNNNTGG 2 cut(s) 1822, 2054
XhoI CTCGAG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 1484
XmnI GAANNNNTTC 1 cut(s) 1334
XspI CTAG 3 cut(s) 9, 1080, 1214
Zsp2I ATGCAT 3 cut(s) 586, 722, 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.