Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028369

Physical Location & Seq

Genomic Coordinates Reverse (-)

22260696 .. 22260926

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTTCATGCAGCTGGTTCTGTTTCTGAATCTCCAGAATCTGTGGGACAAGGGAAGTTCCCTTTGAATTCAATCAATGTAATGCTATCATCCAGGCCTTCTGGGACTCAGCCAACCATAACAAAAGAGGCACGCACTAAAGTCTTACAAGAACAGTCTAATGCTACAAACGGAGGCAGCCATAACCCTTTGGGTGCTTCTAACAACGGCAGTGCCCCAGCTGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

77

Amino Acids

7.74

Weight (kDa)

9.52

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028369)

Species	Orthologous Gene IDs
malus_domestica	MD15G1305800.v1.1
pyrus_communis	pycom15g27030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	67, 72
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	14, 221
AluI	AGCT	2 cut(s)	14, 221
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	11, 177, 221
ApoI	RAATTY	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	23, 189, 208
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	94
BisI	GCNGC	3 cut(s)	12, 178, 222
BlsI	GCNGC	3 cut(s)	13, 179, 223
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	23, 189, 208
BseYI	CCCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	60, 118
BsmFI	GGGAC	2 cut(s)	60, 118
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	23, 189, 208
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	41
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	5 cut(s)	14, 97, 112, 180, 221
CviKI_1	RGCY	5 cut(s)	14, 97, 112, 180, 221
DdeI	CTNAG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 119, 183
FaqI	GGGAC	2 cut(s)	60, 118
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	12, 178, 222
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	12, 178, 222
GluI	GCNGC	3 cut(s)	12, 178, 222
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	3 cut(s)	29, 38, 106
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	48, 79, 87, 106
Lsp1109I	GCAGC	3 cut(s)	23, 189, 208
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	121, 167
MspA1I	CMGCKG	2 cut(s)	14, 221
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	29, 38
PkrI	GCNGC	3 cut(s)	13, 179, 223
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	41
PvuII	CAGCTG	2 cut(s)	14, 221
SatI	GCNGC	3 cut(s)	12, 178, 222
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	2 cut(s)	16, 223
SgeI	CNNG	9 cut(s)	20, 27, 47, 62, 105, 106, 114, 144, 161
Sse9I	AATT	1 cut(s)	67
SseBI	AGGCCT	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	29, 38
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	3 cut(s)	11, 177, 221
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.