pycom15g28160

Protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029381
Physical Location & Seq
Forward (+)
23901758 .. 23903241
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28160.1

Sequence Viewer

Length: 603 bp
ATGAAAATAAGTGGACCAATAGGAAATACCACTAAGAGAAAACACACGGATAATGAATCGCAACCGTCGGATCTCCCAGAGAGTTTACAGTCGCACGTATATATACCCCTTAACCTCTCGAACGTTGGAATCTTTGGTTCATTCGAAGACGGAGAAGACCGAGATAAACAGAGCGCGAACCAAGGAAAGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCAACCGGAGGAAAGGCTCCCAGGAAGCAACTCGCTACCAAGGCTGCCCGTAAGTCTGCACCAACTACTGGCGGAGTCAAGAAGCCCCACAGATACCGCCCTGGTACTGTCGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCTTGATCAGGAAGTTGCCATTCCAGAGGCTTGTTCGTGAAATTGCCCAGGATTTCAAGCGATCATGCGTTTCCAAAGCCACGCGGTGTTGGCACTGCAGGAGGCTGCTGAGGCCTACCTTGTGGGTCTTTTTGAGGACACCAACCTTTGCGCCATCCATGCCAAGCGGGTTACCATCATGCCAAAGGATATCCAGCTTGCCAGGAGGATCAGGGGTGAGCGTGCTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

201

Amino Acids

22.27

Weight (kDa)

10.9

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 107 - 144 3.9e-10 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029381)

Species Orthologous Gene IDs
pyrus_communis pycom10g13100 pycom15g28160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AccII CGCG 2 cut(s) 176, 454
AciI CCGC 4 cut(s) 291, 316, 454, 537
AclI AACGTT 1 cut(s) 123
AclWI GGATC 2 cut(s) 78, 586
AdeI CACNNNGTG 1 cut(s) 456
AfaI GTAC 4 cut(s) 199, 325, 353, 364
AfiI CCNNNNNNNGG 1 cut(s) 287
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 4 cut(s) 239, 319, 417, 571
AluBI AGCT 2 cut(s) 370, 567
AluI AGCT 2 cut(s) 370, 567
Alw21I GWGCWC 1 cut(s) 372
AlwI GGATC 2 cut(s) 78, 586
AoxI GGCC 2 cut(s) 192, 482
ApeKI GCWGC 2 cut(s) 263, 475
AspLEI GCGC 2 cut(s) 176, 523
AspS9I GGNCC 2 cut(s) 14, 193
AsuHPI GGTGA 1 cut(s) 598
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 2 cut(s) 153, 162
Bbv12I GWGCWC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 250, 462
BccI CCATC 3 cut(s) 184, 532, 553
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 4 cut(s) 241, 321, 419, 573
BclI TGATCA 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 466
BfrI CTTAAG 1 cut(s) 596
BisI GCNGC 2 cut(s) 264, 476
BlsI GCNGC 2 cut(s) 265, 477
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 4 cut(s) 241, 321, 419, 573
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 14, 193
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 4 cut(s) 241, 321, 419, 573
BpiI GAAGAC 2 cut(s) 153, 162
Bpu10I CCTNAGC 1 cut(s) 479
Bpu14I TTCGAA 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 5 cut(s) 181, 239, 258, 319, 417
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 4 cut(s) 241, 321, 419, 573
BseDI CCNNGG 5 cut(s) 181, 239, 258, 319, 417
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 2 cut(s) 357, 470
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 250, 462
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 2 cut(s) 176, 454
BshFI GGCC 2 cut(s) 194, 484
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 287
BsnI GGCC 2 cut(s) 194, 484
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 4 cut(s) 70, 375, 431, 578
BspACI CCGC 4 cut(s) 291, 316, 454, 537
BspANI GGCC 2 cut(s) 194, 484
BspCNI CTCAG 2 cut(s) 358, 471
BspFNI CGCG 2 cut(s) 176, 454
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 470
BspPI GGATC 2 cut(s) 78, 586
BspQI GCTCTTC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 596
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 5 cut(s) 181, 239, 258, 319, 417
BssMI GATC 4 cut(s) 70, 375, 431, 578
BssT1I CCWWGG 2 cut(s) 181, 258
Bst2UI CCWGG 4 cut(s) 241, 321, 419, 573
Bst4CI ACNGT 3 cut(s) 66, 90, 328
Bst6I CTCTTC 2 cut(s) 339, 353
BstAFI CTTAAG 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 569, 593
BstDEI CTNAG 3 cut(s) 33, 366, 479
BstEII GGTNACC 1 cut(s) 540
BstF5I GGATG 1 cut(s) 524
BstFNI CGCG 2 cut(s) 176, 454
BstHHI GCGC 2 cut(s) 176, 523
BstKTI GATC 4 cut(s) 73, 378, 434, 581
BstMBI GATC 4 cut(s) 70, 375, 431, 578
BstMWI GCNNNNNNNGC 4 cut(s) 260, 460, 481, 529
BstNI CCWGG 4 cut(s) 241, 321, 419, 573
BstPI GGTNACC 1 cut(s) 540
BstSCI CCNGG 4 cut(s) 239, 319, 417, 571
BstSFI CTRYAG 1 cut(s) 466
BstUI CGCG 2 cut(s) 176, 454
BstV1I GCAGC 2 cut(s) 250, 462
BstV2I GAAGAC 2 cut(s) 153, 162
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 194, 484
BtsCI GGATG 1 cut(s) 524
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 2 cut(s) 569, 593
CfoI GCGC 2 cut(s) 176, 523
Cfr13I GGNCC 2 cut(s) 14, 193
Csp6I GTAC 4 cut(s) 198, 324, 352, 363
CviAII CATG 3 cut(s) 435, 529, 549
CviQI GTAC 4 cut(s) 198, 324, 352, 363
DdeI CTNAG 3 cut(s) 33, 366, 479
DpnI GATC 4 cut(s) 72, 377, 433, 580
DpnII GATC 4 cut(s) 70, 375, 431, 578
DraIII CACNNNGTG 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 339, 353
EarI CTCTTC 2 cut(s) 339, 353
EciI GGCGGA 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 181, 258
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 370
Eco91I GGTNACC 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 540
EcoRII CCWGG 4 cut(s) 239, 319, 417, 571
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 2 cut(s) 181, 258
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 181, 258
FaeI CATG 3 cut(s) 438, 532, 552
FaiI YATR 6 cut(s) 100, 102, 104, 436, 530, 550
FatI CATG 3 cut(s) 434, 528, 548
FauI CCCGC 1 cut(s) 530
FbaI TGATCA 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 264, 476
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 264, 476
GlaI GCGC 2 cut(s) 175, 522
GluI GCNGC 2 cut(s) 264, 476
HaeIII GGCC 2 cut(s) 194, 484
HapII CCGG 1 cut(s) 225
HhaI GCGC 2 cut(s) 176, 523
Hin1II CATG 3 cut(s) 438, 532, 552
Hin6I GCGC 2 cut(s) 174, 521
HinP1I GCGC 2 cut(s) 174, 521
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 3 cut(s) 56, 129, 294
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 3 cut(s) 14, 86, 222
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 7 cut(s) 118, 298, 338, 373, 379, 394, 407
Hpy8I GTNNAC 3 cut(s) 14, 86, 222
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 3 cut(s) 66, 90, 328
HpyCH4IV ACGT 2 cut(s) 96, 123
HpyCH4V TGCA 2 cut(s) 278, 468
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 460, 481, 529
HpyF3I CTNAG 3 cut(s) 33, 366, 479
HpySE526I ACGT 2 cut(s) 96, 123
Hsp92II CATG 3 cut(s) 438, 532, 552
HspAI GCGC 2 cut(s) 174, 521
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 4 cut(s) 70, 375, 431, 578
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 250, 462
MaeII ACGT 2 cut(s) 96, 123
MaeIII GTNAC 1 cut(s) 540
MalI GATC 4 cut(s) 72, 377, 433, 580
MboI GATC 4 cut(s) 70, 375, 431, 578
MboII GAAGA 4 cut(s) 158, 167, 326, 370
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 1 cut(s) 411
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 2 cut(s) 48, 106
MnlI CCTC 7 cut(s) 125, 221, 390, 465, 474, 498, 569
MseI TTAA 2 cut(s) 111, 597
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 4 cut(s) 241, 321, 419, 573
MvaI CCWGG 4 cut(s) 241, 321, 419, 573
MvnI CGCG 2 cut(s) 176, 454
MwoI GCNNNNNNNGC 4 cut(s) 260, 460, 481, 529
NdeII GATC 4 cut(s) 70, 375, 431, 578
NlaIII CATG 3 cut(s) 438, 532, 552
NlaIV GGNNCC 1 cut(s) 237
NspV TTCGAA 1 cut(s) 144
PceI AGGCCT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PfeI GAWTC 2 cut(s) 56, 129
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 2 cut(s) 265, 477
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 123
Psp6I CCWGG 4 cut(s) 239, 319, 417, 571
PspEI GGTNACC 1 cut(s) 540
PspGI CCWGG 4 cut(s) 239, 319, 417, 571
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 14, 193
PstI CTGCAG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 4 cut(s) 199, 325, 353, 364
RsaNI GTAC 4 cut(s) 198, 324, 352, 363
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 111, 597
SatI GCNGC 2 cut(s) 264, 476
Sau3AI GATC 4 cut(s) 70, 375, 431, 578
Sau96I GGNCC 2 cut(s) 14, 193
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 4 cut(s) 241, 321, 419, 573
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 99, 117, 126, 372, 491, 518, 569
SfcI CTRYAG 1 cut(s) 466
SfuI TTCGAA 1 cut(s) 144
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 1 cut(s) 411
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 4 cut(s) 291, 316, 454, 537
SstI GAGCTC 1 cut(s) 372
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 4 cut(s) 239, 319, 417, 571
StyI CCWWGG 2 cut(s) 181, 258
TaaI ACNGT 3 cut(s) 66, 90, 328
TaiI ACGT 2 cut(s) 99, 126
TaqI TCGA 2 cut(s) 119, 144
TaqII GACCGA 1 cut(s) 174
TasI AATT 1 cut(s) 411
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 2 cut(s) 56, 129
Tru1I TTAA 2 cut(s) 111, 597
Tru9I TTAA 2 cut(s) 111, 597
TscAI CASTG 1 cut(s) 470
TseI GCWGC 2 cut(s) 263, 475
TspDTI ATGAA 3 cut(s) 17, 69, 129
TspGWI ACGGA 3 cut(s) 62, 165, 335
TspRI CASTG 1 cut(s) 470
Van91I CCANNNNNTGG 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.