pycom15g29950

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0029466
Physical Location & Seq
Forward (+)
27149315 .. 27150141
827 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGGCCGAAGATCAAGAATCGACGTCGATTCCTCTGAGTCAAGCGGAGAATGGTGGTCCGGATCCCGAAGATCCAGCCAAGTCTCCCCCTCCCTCCCCCAATTCCTCTACTCGTAAGGCTTGCTGCTTTGTTCTCCAAAGTTGGGTCTCAAAGAAGTTTATGACTGGATGTGTGGTGCTTTTTCCTGTTGCTGTTACATTCTTTGTTACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTTAGTCCACTCTATGCTCAGCTTGGCATCGACATCTTCGGTATGTTCTTAATGAATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

101

Amino Acids

11.14

Weight (kDa)

4.36

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029466)

Species Orthologous Gene IDs
pyrus_communis pycom15g29950
rosa_multiflora Rmu_sc0013299.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 1 cut(s) 44
AclWI GGATC 3 cut(s) 56, 65, 69
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 87, 151
AlwI GGATC 3 cut(s) 56, 65, 69
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 56
AvaII GGWCC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 227
BcoDI GTCTC 2 cut(s) 87, 151
BfaI CTAG 1 cut(s) 301
BisI GCNGC 1 cut(s) 124
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 58
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 26, 272
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 87, 151
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 151
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 3 cut(s) 10, 61, 70
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 27, 271
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 3 cut(s) 56, 65, 69
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 169
BssMI GATC 3 cut(s) 10, 61, 70
BssNI GRCGYC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 35, 258
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 3 cut(s) 13, 64, 73
BstMAI GTCTC 2 cut(s) 87, 151
BstMBI GATC 3 cut(s) 10, 61, 70
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 61, 70
BstYI RGATCY 2 cut(s) 61, 70
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 1 cut(s) 210
CviJI RGCY 4 cut(s) 5, 77, 119, 262
CviKI_1 RGCY 4 cut(s) 5, 77, 119, 262
DdeI CTNAG 2 cut(s) 35, 258
DpnI GATC 3 cut(s) 12, 63, 72
DpnII GATC 3 cut(s) 10, 61, 70
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 56
FaeI CATG 1 cut(s) 213
FaiI YATR 4 cut(s) 161, 211, 255, 284
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 301
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 213
HinfI GANTC 3 cut(s) 17, 28, 37
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 3 cut(s) 14, 59, 65
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 2 cut(s) 25, 28
HpyCH4IV ACGT 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 35, 258
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 213
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 10, 61, 70
LpnPI CCDG 4 cut(s) 72, 87, 150, 198
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 301
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 193, 205
MalI GATC 3 cut(s) 12, 63, 72
MboI GATC 3 cut(s) 10, 61, 70
MboII GAAGA 3 cut(s) 20, 80, 268
MflI RGATCY 2 cut(s) 61, 70
MluCI AATT 2 cut(s) 100, 295
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 4 cut(s) 42, 99, 103, 115
MroI TCCGGA 1 cut(s) 58
MseI TTAA 1 cut(s) 290
MspI CCGG 1 cut(s) 59
NdeII GATC 3 cut(s) 10, 61, 70
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 17, 28
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 2 cut(s) 61, 70
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 3 cut(s) 10, 61, 70
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 46
SetI ASST 2 cut(s) 26, 264
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 56
Sse9I AATT 2 cut(s) 100, 295
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 301
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 20, 26, 270
TasI AATT 2 cut(s) 100, 295
TfiI GAWTC 2 cut(s) 17, 28
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseI GCWGC 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 56
XspI CTAG 1 cut(s) 301
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.