Rmu_sc0013299.1_g000002

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013299.1
OG0029466
Physical Location & Seq
Reverse (-)
10596 .. 11605
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013299.1_g000002.1.cds

Sequence Viewer

Length: 303 bp
atggcggaagataaggagtcgacgtcgattccactgagtcaagctgagaacggcggtcccgatcccgaagacccggccaagtctcctccaagctctcccaattcctccactcgtaaggcttgttgttttgttctccagagttgggtgtctaagaagtttatgactggaattgtagttcttttccctgttgctgttacttttttcattacgtggtggtttgtccagtttgttgatgggttcttcagtccactctatgagcagcttggcattgagatcttcggtaagttatggatgtataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

100

Amino Acids

11.25

Weight (kDa)

4.69

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029466)

Species Orthologous Gene IDs
pyrus_communis pycom15g29950
rosa_multiflora Rmu_sc0013299.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 20
AciI CCGC 2 cut(s) 5, 54
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 142
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 3 cut(s) 44, 93, 262
AluI AGCT 3 cut(s) 44, 93, 262
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 87
BglII AGATCT 1 cut(s) 273
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 169, 223
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 26, 36
BseNI ACTGG 2 cut(s) 169, 223
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 61, 273
BspACI CCGC 2 cut(s) 5, 54
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 27, 37
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 56
BsrI ACTGG 2 cut(s) 169, 223
BssMI GATC 2 cut(s) 61, 273
BssNI GRCGYC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 35, 45, 150
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 2 cut(s) 64, 276
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 61, 273
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 56
CviJI RGCY 5 cut(s) 44, 77, 93, 119, 262
CviKI_1 RGCY 5 cut(s) 44, 77, 93, 119, 262
DdeI CTNAG 3 cut(s) 35, 45, 150
DpnI GATC 2 cut(s) 63, 275
DpnII GATC 2 cut(s) 61, 273
EaeI YGGCCR 1 cut(s) 75
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 226
FaiI YATR 4 cut(s) 161, 255, 289, 297
FaqI GGGAC 1 cut(s) 42
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 3 cut(s) 17, 28, 37
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 21, 248
Hpy188III TCNNGA 3 cut(s) 59, 65, 136
Hpy8I GTNNAC 2 cut(s) 21, 248
Hpy99I CGWCG 2 cut(s) 25, 28
HpyCH4IV ACGT 2 cut(s) 23, 209
HpyF3I CTNAG 3 cut(s) 35, 45, 150
HpySE526I ACGT 2 cut(s) 23, 209
Hsp92I GRCGYC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 61, 273
LpnPI CCDG 5 cut(s) 87, 149, 150, 198, 236
Lsp1109I GCAGC 1 cut(s) 271
MaeII ACGT 2 cut(s) 23, 209
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 63, 275
MboI GATC 2 cut(s) 61, 273
MboII GAAGA 4 cut(s) 20, 80, 232, 268
MflI RGATCY 1 cut(s) 273
MluCI AATT 3 cut(s) 100, 168, 298
MlyI GAGTC 2 cut(s) 26, 46
MnlI CCTC 2 cut(s) 96, 115
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 74
NciI CCSGG 1 cut(s) 74
NdeII GATC 2 cut(s) 61, 273
NlaIV GGNNCC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 2 cut(s) 25, 45
PpsI GAGTC 2 cut(s) 25, 45
Ppu21I YACGTR 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 273
SalI GTCGAC 1 cut(s) 19
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 2 cut(s) 61, 273
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 26, 46
ScrFI CCNGG 1 cut(s) 74
SetI ASST 5 cut(s) 26, 46, 95, 212, 264
SinI GGWCC 1 cut(s) 56
Sse9I AATT 3 cut(s) 100, 168, 298
SsiI CCGC 2 cut(s) 5, 54
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 2 cut(s) 26, 212
TaqI TCGA 2 cut(s) 20, 26
TasI AATT 3 cut(s) 100, 168, 298
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 20
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.