Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029467

Physical Location & Seq

Genomic Coordinates Reverse (-)

29597396 .. 29599148

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTAGAAAATGGAACGGTTCCCCCTATTGCTCCCTGGTCTGCAATATTGACCTGCATGTCTCGAACAGCCCAAAAGGCTACTGATTGTGATGAACTATTTATAGCTGAGAAAGGTTATGACGGTGATGCTGGCCAAGTCCGTCGGCTTGAGGTAACCTCTTTGGTTGTGACGGACTTAAGTGATTTTTTTGTCCTTCATTCATACCGTACGCTGTCTATGCTTGTTTCCTTTTTCTTGCAGCATATTTATAAACACTCCCTCCTTGATTCGGGGATATTGTGCTGTCTCGTTCATATTCTCAATGCCCTTCTGGATCCTGATGAAGCCAATCAAAAGCAAAAGGCTACTGATCGTGATGAACTATTTACAACTGAGAAAGATTATGACGGTGATGCAGGTCAAGTCCGTCAGCTTGAGGTAATTCTTGTTCTTCTCTTGGTCAATGGCAACAGGAGCACAGCAAAACATATTCGCAAACATCATCTGGTATGCTCTTTTAATGGCTGTCAAAGATTTCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

176

Amino Acids

19.66

Weight (kDa)

5.75

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029467)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g31250 pycom15g38260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	2 cut(s)	62, 389
AclWI	GGATC	2 cut(s)	311, 324
AcoI	YGGCCR	1 cut(s)	133
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflII	CTTAAG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	521
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	107, 415
AluI	AGCT	2 cut(s)	107, 415
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	2 cut(s)	66, 293
AlwI	GGATC	2 cut(s)	311, 324
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	137, 404
BalI	TGGCCA	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	66, 293
BfrI	CTTAAG	1 cut(s)	178
BfuAI	ACCTGC	2 cut(s)	62, 389
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	21, 318
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	118, 385
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	2 cut(s)	170, 437
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	99, 366
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	461
BsiWI	CGTACG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	66, 293
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	316, 352
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	100, 367
BspLI	GGNNCC	2 cut(s)	21, 318
BspMI	ACCTGC	2 cut(s)	62, 389
BspPI	GGATC	2 cut(s)	311, 324
BspTI	CTTAAG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	316, 352
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	4 cut(s)	19, 125, 209, 392
BstAFI	CTTAAG	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	108, 375
BstEII	GGTNACC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	319, 355
BstMAI	GTCTC	2 cut(s)	66, 293
BstMBI	GATC	2 cut(s)	316, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 220, 456
BstNI	CCWGG	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	61
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	135
BveI	ACCTGC	2 cut(s)	62, 389
Cac8I	GCNNGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	71, 80, 107, 135, 148, 329, 347, 415, 507
CviKI_1	RGCY	9 cut(s)	71, 80, 107, 135, 148, 329, 347, 415, 507
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	108, 375
DpnI	GATC	2 cut(s)	318, 354
DpnII	GATC	2 cut(s)	316, 352
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	133
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	61
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	2 cut(s)	137, 404
Hpy188III	TCNNGA	5 cut(s)	63, 314, 320, 356, 525
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	206, 320
HpyCH4III	ACNGT	4 cut(s)	19, 125, 209, 392
HpyCH4V	TGCA	4 cut(s)	44, 57, 241, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 220, 456
HpyF3I	CTNAG	2 cut(s)	108, 375
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	316, 352
LmnI	GCTCC	2 cut(s)	37, 456
LpnPI	CCDG	9 cut(s)	22, 49, 67, 117, 299, 333, 384, 439, 473
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	118, 385
MaeIII	GTNAC	2 cut(s)	154, 169
MalI	GATC	2 cut(s)	318, 354
MboI	GATC	2 cut(s)	316, 352
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	461
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	135
MnlI	CCTC	4 cut(s)	145, 169, 272, 412
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	179, 501
Msp20I	TGGCCA	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	77, 220, 456
NdeII	GATC	2 cut(s)	316, 352
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	21, 318
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	269
Pfl23II	CGTACG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	35
PspLI	CGTACG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	21, 318
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	179, 501
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	316, 352
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	8 cut(s)	56, 109, 118, 156, 161, 403, 417, 423
SfaNI	GCATC	2 cut(s)	118, 385
SmlI	CTYRAG	3 cut(s)	149, 178, 416
SmoI	CTYRAG	3 cut(s)	149, 178, 416
Sse9I	AATT	1 cut(s)	423
SspI	AATATT	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	4 cut(s)	19, 125, 209, 392
TaqI	TCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	179, 501
Tru9I	TTAA	2 cut(s)	179, 501
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	6 cut(s)	108, 188, 192, 284, 339, 375
TspGWI	ACGGA	3 cut(s)	131, 188, 398
Vha464I	CTTAAG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.