Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028392

Physical Location & Seq

Genomic Coordinates Reverse (-)

31278086 .. 31278641

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTTGGTAATGTTCTGAAAGGAATTAGACGCTGTTATCTGTCTAGAGAGGCCTTCCGTCTTCCCACTGTAATAATTGGTAGTGTTTCTTATTCAGGAATCTTCAGTACTATGAGACAAGTCAAGGTTAAAGGCGTGTCTGGTTTTTGTTCTCTAGATTCTGGTGGAGAATCTCACATCTTACAATTTGAATCAGCTAGTGAAAGCCGTAGACATTCATCCTTAAATGTGCAGTTCACTCCTGAAATAGAAAAGAAGTATGTCCATCATGTTTATGATGCTGTCGCACCTCATTTCAGTTGGCCAAAAGTAGCCAATTTTCTATCTTCCTTACCTTCAGGATCTCTTGTTCTTGATGCAGGATGTCGAACATGTCACCAAATTATATTTACGTTGACATGTCACCAAAGTTTTGTTTACGCTGTCCTGAATGATGAGTTTTTGCTCATCGAATTCGGGTTCATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

157

Amino Acids

17.43

Weight (kDa)

8.31

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028392)

Species	Orthologous Gene IDs
malus_domestica	MD15G1361600.v1.1
pyrus_communis	pycom15g32320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	88, 321
AfaI	GTAC	1 cut(s)	109
AflIII	ACRYGT	2 cut(s)	371, 398
AgsI	TTSAA	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	51, 302
ApoI	RAATTY	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	368, 395
BalI	TGGCCA	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	53
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	3 cut(s)	45, 155, 198
BmcAI	AGTACT	1 cut(s)	109
BmsI	GCATC	2 cut(s)	268, 346
BpiI	GAAGAC	1 cut(s)	53
BseGI	GGATG	2 cut(s)	218, 368
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	53, 304
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	53, 304
Bsp143I	GATC	1 cut(s)	341
BspANI	GGCC	2 cut(s)	53, 304
BspPI	GGATC	1 cut(s)	349
BssMI	GATC	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	218, 368
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	341
BstNSI	RCATGY	2 cut(s)	375, 402
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	53, 304
BtsCI	GGATG	2 cut(s)	218, 368
BtsIMutI	CAGTG	1 cut(s)	66
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	4 cut(s)	269, 372, 399, 463
CviJI	RGCY	6 cut(s)	53, 197, 207, 304, 314, 467
CviKI_1	RGCY	6 cut(s)	53, 197, 207, 304, 314, 467
CviQI	GTAC	1 cut(s)	108
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	88, 321
EcoRI	GAATTC	1 cut(s)	452
FaeI	CATG	4 cut(s)	272, 375, 402, 466
FaiI	YATR	8 cut(s)	113, 261, 270, 276, 373, 386, 400, 464
FatI	CATG	4 cut(s)	268, 371, 398, 462
FblI	GTMKAC	1 cut(s)	211
FokI	GGATG	2 cut(s)	205, 375
FspBI	CTAG	3 cut(s)	45, 155, 198
HaeIII	GGCC	2 cut(s)	53, 304
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	272, 375, 402, 466
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	4 cut(s)	99, 158, 170, 191
HphI	GGTGA	2 cut(s)	368, 395
Hpy166II	GTNNAC	4 cut(s)	212, 237, 396, 418
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	7 cut(s)	45, 96, 155, 242, 339, 353, 427
Hpy8I	GTNNAC	4 cut(s)	212, 237, 396, 418
HpyAV	CCTTC	2 cut(s)	64, 345
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	232, 359
HpySE526I	ACGT	1 cut(s)	392
Hsp92II	CATG	4 cut(s)	272, 375, 402, 466
Kzo9I	GATC	1 cut(s)	341
LpnPI	CCDG	7 cut(s)	81, 126, 147, 255, 324, 345, 440
LweI	GCATC	2 cut(s)	268, 346
MaeI	CTAG	3 cut(s)	45, 155, 198
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	374, 401
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	3 cut(s)	53, 94, 318
MflI	RGATCY	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	6 cut(s)	24, 75, 185, 316, 381, 452
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	2 cut(s)	43, 300
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	2 cut(s)	129, 224
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	304
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	4 cut(s)	272, 375, 402, 466
NmuCI	GTSAC	2 cut(s)	374, 401
NspI	RCATGY	2 cut(s)	375, 402
PceI	AGGCCT	1 cut(s)	53
PciI	ACATGT	2 cut(s)	371, 398
PfeI	GAWTC	4 cut(s)	99, 158, 170, 191
PscI	ACATGT	2 cut(s)	371, 398
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	129, 224
Sau3AI	GATC	1 cut(s)	341
ScaI	AGTACT	1 cut(s)	109
SetI	ASST	5 cut(s)	129, 199, 292, 337, 395
SfaNI	GCATC	2 cut(s)	268, 346
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	6 cut(s)	24, 75, 185, 316, 381, 452
SseBI	AGGCCT	1 cut(s)	53
SspMI	CTAG	3 cut(s)	45, 155, 198
StuI	AGGCCT	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	367, 450
TasI	AATT	6 cut(s)	24, 75, 185, 316, 381, 452
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	4 cut(s)	99, 158, 170, 191
Tru1I	TTAA	2 cut(s)	129, 224
Tru9I	TTAA	2 cut(s)	129, 224
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	374, 401
Tsp45I	GTSAC	2 cut(s)	374, 401
TspDTI	ATGAA	2 cut(s)	207, 451
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	452
XbaI	TCTAGA	2 cut(s)	44, 154
XceI	RCATGY	2 cut(s)	375, 402
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	3 cut(s)	45, 155, 198
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.