Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028195

Physical Location & Seq

Genomic Coordinates Reverse (-)

36588607 .. 36593203

Gene Structure 4597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCAGTTAAAGCCCTTCAACTCCTTCAGCATCGCCTTCATGATGAGCGGCGCACTCTTGCTCGTTTTCTTCTGCAGCTTCCTCGAATTCCCTTTTCTATCAACCTCAATCAAACCCATCAACGATCCGACCAAGTTCACACCCGACCCGTTTACCAACTTGATCGGCGCCTTCAGGAAGTGGGATGCCCAAGTGGGTTGCTCTCGTTTCAGAGAGAAGCACAAGCTGCAGATGTTGCAGAACAAGTCTTCTTCTCTGCAACAAATTCGCGGCGAATCGGAGTGTGGGGAGGCGAAATCGGAGCATGTTAGCGTGCTGGTGAAAGGGTGGACTTGGATTCCTGATAATTTGGATAGTTTGTATTCATGCTCGTGTGGGTTGAGCTGTTTGTGGACTAAATCTCCTGTTCTTGCTGACAAGCCTGATGCTTTGCTGTTTGAGACTACTACACCTCCCCTTCAGAGACACAGTGGAGATCCACTTCGCGTGTACATGGATCTTGAGGCTGGCCGGAAGGGATCGATCGATCTGGTGTTGAGGATATATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

8.21

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028195)

Species	Orthologous Gene IDs
malus_domestica	MD10G1093700.v1.1
pyrus_communis	pycom15g36610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	2 cut(s)	270, 486
AciI	CCGC	2 cut(s)	48, 270
AclWI	GGATC	4 cut(s)	119, 470, 504, 526
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	86, 264
AcuI	CTGAAG	3 cut(s)	10, 157, 443
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	3 cut(s)	78, 226, 384
AluI	AGCT	3 cut(s)	78, 226, 384
Alw26I	GTCTC	2 cut(s)	434, 457
AlwI	GGATC	4 cut(s)	119, 470, 504, 526
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	75, 226
ApoI	RAATTY	2 cut(s)	86, 264
AspLEI	GCGC	2 cut(s)	53, 170
AsuHPI	GGTGA	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	87, 213
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 248, 282
BcoDI	GTCTC	2 cut(s)	434, 457
BfmI	CTRYAG	2 cut(s)	73, 227
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	4 cut(s)	49, 76, 227, 271
BlsI	GCNGC	4 cut(s)	50, 77, 228, 272
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	3 cut(s)	39, 175, 415
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	521
Bsa29I	ATCGAT	2 cut(s)	521, 525
BsaHI	GRCGYC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 436, 466
BseCI	ATCGAT	2 cut(s)	521, 525
BseGI	GGATG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	87, 213
Bsh1236I	CGCG	2 cut(s)	270, 486
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	2 cut(s)	521, 525
BsiEI	CGRYCG	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	511
BsmAI	GTCTC	2 cut(s)	434, 457
BsnI	GGCC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
BspACI	CCGC	2 cut(s)	48, 270
BspANI	GGCC	1 cut(s)	510
BspDI	ATCGAT	2 cut(s)	521, 525
BspFNI	CGCG	2 cut(s)	270, 486
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	2 cut(s)	77, 231
BspPI	GGATC	4 cut(s)	119, 470, 504, 526
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	489
BssMI	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	226, 235
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	314, 508
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	270, 486
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	53, 170
BstKTI	GATC	7 cut(s)	127, 165, 478, 499, 521, 525, 529
BstMAI	GTCTC	2 cut(s)	434, 457
BstMBI	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 226, 235
BstNSI	RCATGY	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	73, 227
BstUI	CGCG	2 cut(s)	270, 486
BstV1I	GCAGC	2 cut(s)	87, 213
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	475, 496
BstYI	RGATCY	2 cut(s)	475, 496
Bsu15I	ATCGAT	2 cut(s)	521, 525
BsuRI	GGCC	1 cut(s)	510
BsuTUI	ATCGAT	2 cut(s)	521, 525
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	314, 508
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	2 cut(s)	53, 170
ClaI	ATCGAT	2 cut(s)	521, 525
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	4 cut(s)	40, 305, 366, 493
CviJI	RGCY	7 cut(s)	13, 78, 226, 384, 421, 506, 510
CviKI_1	RGCY	7 cut(s)	13, 78, 226, 384, 421, 506, 510
CviQI	GTAC	1 cut(s)	490
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	7 cut(s)	126, 164, 477, 498, 520, 524, 528
DpnII	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
EaeI	YGGCCR	1 cut(s)	508
Eco57I	CTGAAG	3 cut(s)	10, 157, 443
EcoRI	GAATTC	1 cut(s)	86
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	4 cut(s)	43, 308, 369, 496
FaiI	YATR	6 cut(s)	41, 306, 367, 494, 544, 550
FatI	CATG	4 cut(s)	39, 304, 365, 492
Fnu4HI	GCNGC	4 cut(s)	49, 76, 227, 271
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	49, 76, 227, 271
GlaI	GCGC	2 cut(s)	52, 169
GluI	GCNGC	4 cut(s)	49, 76, 227, 271
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	511
HhaI	GCGC	2 cut(s)	53, 170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	43, 308, 369, 496
Hin6I	GCGC	2 cut(s)	51, 168
HinP1I	GCGC	2 cut(s)	51, 168
HinfI	GANTC	2 cut(s)	275, 337
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	5 cut(s)	138, 153, 330, 393, 490
Hpy188I	TCNGA	5 cut(s)	129, 212, 280, 301, 462
Hpy188III	TCNNGA	4 cut(s)	40, 175, 341, 500
Hpy8I	GTNNAC	5 cut(s)	138, 153, 330, 393, 490
HpyAV	CCTTC	6 cut(s)	25, 34, 46, 181, 467, 508
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	5 cut(s)	4, 75, 229, 238, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 226, 235
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	43, 308, 369, 496
HspAI	GCGC	2 cut(s)	51, 168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	160, 302, 354, 417, 435, 492, 515, 524
Lsp1109I	GCAGC	2 cut(s)	87, 213
LweI	GCATC	3 cut(s)	39, 175, 415
MalI	GATC	7 cut(s)	126, 164, 477, 498, 520, 524, 528
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
MboII	GAAGA	3 cut(s)	61, 240, 243
MflI	RGATCY	2 cut(s)	475, 496
MluCI	AATT	3 cut(s)	86, 264, 346
Mly113I	GGCGCC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	92, 115, 283, 462, 496, 531
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	1 cut(s)	511
MvnI	CGCG	2 cut(s)	270, 486
MwoI	GCNNNNNNNGC	3 cut(s)	10, 226, 235
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
NlaIII	CATG	4 cut(s)	43, 308, 369, 496
NlaIV	GGNNCC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	275, 337
PkrI	GCNGC	4 cut(s)	50, 77, 228, 272
Ple19I	CGATCG	1 cut(s)	525
PluTI	GGCGCC	1 cut(s)	171
PsiI	TTATAA	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	169
PstI	CTGCAG	2 cut(s)	77, 231
PsuI	RGATCY	2 cut(s)	475, 496
PvuI	CGATCG	1 cut(s)	525
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	4 cut(s)	49, 76, 227, 271
Sau3AI	GATC	7 cut(s)	124, 162, 475, 496, 518, 522, 526
SetI	ASST	5 cut(s)	80, 107, 228, 386, 454
SfaNI	GCATC	3 cut(s)	39, 175, 415
SfcI	CTRYAG	2 cut(s)	73, 227
SfoI	GGCGCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	86, 264, 346
SsiI	CCGC	2 cut(s)	48, 270
SspDI	GGCGCC	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	3 cut(s)	84, 521, 525
TasI	AATT	3 cut(s)	86, 264, 346
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	51, 273
TfiI	GAWTC	2 cut(s)	275, 337
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	2 cut(s)	75, 226
TspDTI	ATGAA	2 cut(s)	28, 354
TspRI	CASTG	1 cut(s)	475
XapI	RAATTY	2 cut(s)	86, 264
XceI	RCATGY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.