pycom15g38260

domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
38092751 .. 38093864
1114 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGTCTCGAACAGCCCAAAAGGCTACTGATCGTGATGAACTATTTACAGCTGAGAAAGGTTATGACGTTGATGTTGGTCAAGTCCGTCGGCTTGAGGGATATTGTGCTGTCTCTTTCATATTCTCAATACCCTTCTGGATCCTGGATCCTGATGAAGCCAATCAAAAGCAAAAGGCTACCGACTGTGATGAACTATTTACAACTGACAAAGATTATGACGGTGATGCAGGTCAAGTCAGTCAGCTTGAGGTACAGGGGATTGCTGTGCATATTATGAAAGCAATGGCAAACCATCCTTTGGCAGCACAAAGTTTGAGTGAGGATGAGTCTCTTCAGTTGCTCGTTCAGATGGTGCGAATGGCTCTTTGA

Protein Analysis

123

Amino Acids

13.63

Weight (kDa)

4.43

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029467)

Species Orthologous Gene IDs
pyrus_communis pycom15g31250 pycom15g38260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 298
AclWI GGATC 4 cut(s) 133, 140, 146, 153
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 298
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 50, 244
AluI AGCT 2 cut(s) 50, 244
Alw26I GTCTC 3 cut(s) 9, 115, 333
AlwI GGATC 4 cut(s) 133, 140, 146, 153
ApeKI GCWGC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 233
BamHI GGATCC 2 cut(s) 138, 145
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 300, 343
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 9, 115, 333
BfuAI ACCTGC 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 140, 147
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 113, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 292, 328
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 3 cut(s) 9, 115, 333
Bsp143I GATC 3 cut(s) 28, 138, 145
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 140, 147
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 4 cut(s) 133, 140, 146, 153
BsrDI GCAATG 1 cut(s) 288
BssMI GATC 3 cut(s) 28, 138, 145
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 185, 221
Bst6I CTCTTC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 292, 328
BstKTI GATC 3 cut(s) 31, 141, 148
BstMAI GTCTC 3 cut(s) 9, 115, 333
BstMBI GATC 3 cut(s) 28, 138, 145
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 314
BstX2I RGATCY 2 cut(s) 138, 145
BstYI RGATCY 2 cut(s) 138, 145
BtsCI GGATG 2 cut(s) 292, 328
BveI ACCTGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 251
CviJI RGCY 8 cut(s) 14, 23, 50, 91, 158, 176, 244, 362
CviKI_1 RGCY 8 cut(s) 14, 23, 50, 91, 158, 176, 244, 362
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 30, 140, 147
DpnII GATC 3 cut(s) 28, 138, 145
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 141
FaiI YATR 5 cut(s) 63, 119, 216, 270, 275
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 2 cut(s) 279, 335
Fsp4HI GCNGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 303
HinfI GANTC 1 cut(s) 326
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 4 cut(s) 6, 32, 136, 149
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 185, 221
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 227, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 66
Kzo9I GATC 3 cut(s) 28, 138, 145
LpnPI CCDG 6 cut(s) 121, 128, 155, 162, 213, 239
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 214
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 30, 140, 147
MboI GATC 3 cut(s) 28, 138, 145
MboII GAAGA 1 cut(s) 323
MflI RGATCY 2 cut(s) 138, 145
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 3 cut(s) 88, 241, 313
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 3 cut(s) 28, 138, 145
NlaIV GGNNCC 2 cut(s) 140, 147
PflMI CCANNNNNTGG 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 140, 147
PsuI RGATCY 2 cut(s) 138, 145
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 3 cut(s) 28, 138, 145
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 143
SetI ASST 6 cut(s) 52, 61, 69, 232, 246, 252
SfaNI GCATC 1 cut(s) 214
SmlI CTYRAG 2 cut(s) 92, 245
SmoI CTYRAG 2 cut(s) 92, 245
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 185, 221
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 7
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 5 cut(s) 51, 106, 168, 204, 290
TspGWI ACGGA 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.