Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016206

Physical Location & Seq

Genomic Coordinates Reverse (-)

38361536 .. 38363157

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAAAGTTTGTGCGACAAGTATGGAATACCTACTGCTAAGTATCAAACGTTTACAGACCCATCTGCTGCAAAACAATATATACAAGACCAAGGGGTGCCTATTGTCGTTAAAGCTGATGGATTGGCTGCTGGGAAAGGAGTTATTGTTGCTATGACTTTGAACGAGGCTTTTGATGCTGTTGAATCAATGTTAGTAAAAGGTTCTTTTGGGTCTGCTGGTTGTCGTGTCATTGTTGAGGAATATCTGGAAGGAGAAGAAGCGTCTTTCTTTGCACTGGTGGATGGAGAGAATGCTATTCCTCTGGAATCTGCTCAGGACCATAAACGTGTTGGGGATGGCGATACGGGGCCTAATACTGGTGGAATGGGTGCATACTCACCAGCCCCCATCCTAACTAAAGAACTTGAAGATTTAGTCATGAAATCCATCATTTACCCCACAGTGAAAGGCATGTCAGCCGAGGGCTGCAAGTTTGTTGGGGTTTTATATGCTGGACTCATGATAGAAAAAAAGTCTGGCTTACCTAAACTGATAGAGTACAATGTACGTTTTGGCGATCCAGAGTGTCAGGTTTTAATGGTTCGCTTGGAGTCTGATCTGGCACAAGTTCTACTTGCAGCTTGTAGAGGACAGTTAAGTGAGGTGTCGTTGAACTGGTCGACTGGGTCAGCCATGGTGGTGGTAATGGCAAGAAAGGGGTACCCAGGTTCATATGAGAAGGGAAGTGTGATCCGTAACCTTGATGAAGCAGAAGCTGTTGCCCCATCTGTTAAGGTATTTCATGCTGGAACTGCACTGGATTTAGATGGCAATTTCATTGCTGCTGGGGGACGTGTTCTTGGGGTGACCGCCAAGGGAATAGATCTCAAAGAGGCATGCGATCGGGCATATCAAGGGGTTGAACAAATTAATTGGCCGGGAGGGTTCTACCGCCGTGATATTGGCTGGAGAGCCCTTCCTTTTCCTCAGAAACAATTTGTGAGAGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

GARS_A GARS_C GARS_N

Protein Analysis

332

Amino Acids

35.39

Weight (kDa)

5.22

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GARS_A	PF01071	1 - 190	3.3e-82	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
ATP-grasp	PF02222	5 - 84	9.3e-06	ATP-grasp domain
GARS_C	PF02843	225 - 318	8.1e-32	Phosphoribosylglycinamide synthetase, C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09830
malus_domestica	MD08G1243400.v1.1 MD15G1437700.v1.1
prunus_persica	Prupe.1G580800_v2.0.a1
pyrus_communis	pycom08g21110 pycom15g38590
rosa_laevigata	RLG00000026323
rosa_multiflora	Rmu_sc0016989.1_g000004
rosa_roxburghii	Rroxscaffold_4G00279600
rosa_rugosa	Rorug01G0418600
rosa_samantha	Rh1AG443500 Rh1BG398400 Rh1CG411800 Rh1DG429100
rosa_wichuraiana	Rw1G038510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	702
AccB1I	GGYRCC	2 cut(s)	97, 702
AccI	GTMKAC	1 cut(s)	662
AciI	CCGC	2 cut(s)	852, 934
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	2 cut(s)	554, 727
AcoI	YGGCCR	1 cut(s)	917
AfaI	GTAC	3 cut(s)	542, 549, 704
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	2 cut(s)	328, 835
AgsI	TTSAA	5 cut(s)	163, 185, 410, 655, 905
AjiI	CACGTC	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	3 cut(s)	116, 623, 758
AluI	AGCT	3 cut(s)	116, 623, 758
AlwI	GGATC	2 cut(s)	554, 727
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	350, 917
ApeKI	GCWGC	5 cut(s)	68, 128, 468, 620, 824
AseI	ATTAAT	1 cut(s)	912
Asp718I	GGTACC	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	319, 350
AsuC2I	CCSGG	1 cut(s)	921
AsuHPI	GGTGA	2 cut(s)	372, 859
AvaII	GGWCC	1 cut(s)	319
BaeI	ACNNNNGTAYC	2 cut(s)	694, 727
BanI	GGYRCC	2 cut(s)	97, 702
BanII	GRGCYC	1 cut(s)	958
BbvI	GCAGC	5 cut(s)	55, 115, 455, 632, 811
BccI	CCATC	8 cut(s)	70, 113, 278, 332, 398, 437, 775, 803
BceAI	ACGGC	1 cut(s)	921
BciT130I	CCWGG	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	921
BglII	AGATCT	1 cut(s)	865
BisI	GCNGC	5 cut(s)	69, 129, 469, 621, 825
BlsI	GCNGC	5 cut(s)	70, 130, 470, 622, 826
Bme1390I	CCNGG	2 cut(s)	708, 921
Bme18I	GGWCC	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	319, 350
BmiI	GGNNCC	3 cut(s)	99, 351, 704
BmrFI	CCNGG	2 cut(s)	708, 921
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	970
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	921
BsaJI	CCNNGG	5 cut(s)	91, 462, 675, 706, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	5 cut(s)	282, 364, 662, 670, 804
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	5 cut(s)	91, 462, 675, 706, 855
BseGI	GGATG	3 cut(s)	289, 343, 390
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	2 cut(s)	329, 983
BseNI	ACTGG	5 cut(s)	282, 364, 662, 670, 804
BseXI	GCAGC	5 cut(s)	55, 115, 455, 632, 811
BseYI	CCCAGC	2 cut(s)	131, 827
BsgI	GTGCAG	1 cut(s)	780
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	2 cut(s)	352, 919
BshNI	GGYRCC	2 cut(s)	97, 702
BsiEI	CGRYCG	1 cut(s)	886
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	846
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	846
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	352, 919
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	5 cut(s)	559, 598, 732, 865, 883
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	2 cut(s)	852, 934
BspANI	GGCC	2 cut(s)	352, 919
BspCNI	CTCAG	2 cut(s)	328, 982
BspHI	TCATGA	2 cut(s)	420, 501
BspLI	GGNNCC	3 cut(s)	99, 351, 704
BspPI	GGATC	2 cut(s)	554, 727
BspT107I	GGYRCC	2 cut(s)	97, 702
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	5 cut(s)	282, 364, 662, 670, 804
BssECI	CCNNGG	5 cut(s)	91, 462, 675, 706, 855
BssMI	GATC	5 cut(s)	559, 598, 732, 865, 883
BssT1I	CCWWGG	3 cut(s)	91, 675, 855
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	2 cut(s)	445, 636
BstC8I	GCNNGC	1 cut(s)	880
BstDEI	CTNAG	3 cut(s)	39, 315, 969
BstDSI	CCRYGG	1 cut(s)	675
BstEII	GGTNACC	1 cut(s)	847
BstF5I	GGATG	3 cut(s)	289, 343, 390
BstKTI	GATC	5 cut(s)	562, 601, 735, 868, 886
BstMBI	GATC	5 cut(s)	559, 598, 732, 865, 883
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 794
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	2 cut(s)	457, 882
BstPI	GGTNACC	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	706, 919
BstV1I	GCAGC	5 cut(s)	55, 115, 455, 632, 811
BstX2I	RGATCY	1 cut(s)	865
BstXI	CCANNNNNNTGG	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	865
BsuRI	GGCC	2 cut(s)	352, 919
BtgI	CCRYGG	1 cut(s)	675
BtrI	CACGTC	1 cut(s)	836
BtsCI	GGATG	3 cut(s)	289, 343, 390
BtsIMutI	CAGTG	3 cut(s)	275, 450, 797
Cac8I	GCNNGC	1 cut(s)	880
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	2 cut(s)	420, 501
Cfr13I	GGNCC	2 cut(s)	319, 350
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	541, 548, 703
CviAII	CATG	6 cut(s)	421, 454, 502, 676, 785, 879
CviQI	GTAC	3 cut(s)	541, 548, 703
DdeI	CTNAG	3 cut(s)	39, 315, 969
DpnI	GATC	5 cut(s)	561, 600, 734, 867, 885
DpnII	GATC	5 cut(s)	559, 598, 732, 865, 883
EaeI	YGGCCR	1 cut(s)	917
Eco130I	CCWWGG	3 cut(s)	91, 675, 855
Eco24I	GRGCYC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	847
EcoO109I	RGGNCCY	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	3 cut(s)	91, 675, 855
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	3 cut(s)	91, 675, 855
FaeI	CATG	6 cut(s)	424, 457, 505, 679, 788, 882
FalI	AAGNNNNNCTT	4 cut(s)	506, 538, 600, 632
FaqI	GGGAC	1 cut(s)	846
FatI	CATG	6 cut(s)	420, 453, 501, 675, 784, 878
FauNDI	CATATG	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	5 cut(s)	69, 129, 469, 621, 825
FokI	GGATG	3 cut(s)	296, 350, 377
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	5 cut(s)	69, 129, 469, 621, 825
GluI	GCNGC	5 cut(s)	69, 129, 469, 621, 825
GsaI	CCCAGC	2 cut(s)	135, 831
GsuI	CTGGAG	1 cut(s)	970
HaeIII	GGCC	2 cut(s)	352, 919
HapII	CCGG	1 cut(s)	920
HgaI	GACGC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	424, 457, 505, 679, 788, 882
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	4 cut(s)	185, 308, 498, 593
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	2 cut(s)	372, 859
Hpy166II	GTNNAC	2 cut(s)	54, 663
Hpy188I	TCNGA	2 cut(s)	598, 972
Hpy188III	TCNNGA	6 cut(s)	248, 305, 317, 421, 502, 563
Hpy8I	GTNNAC	2 cut(s)	54, 663
HpyAV	CCTTC	3 cut(s)	245, 715, 968
HpyCH4III	ACNGT	2 cut(s)	445, 636
HpyCH4IV	ACGT	4 cut(s)	50, 328, 550, 835
HpyCH4V	TGCA	6 cut(s)	71, 275, 374, 471, 620, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 794
HpyF3I	CTNAG	3 cut(s)	39, 315, 969
HpySE526I	ACGT	4 cut(s)	50, 328, 550, 835
Hsp92II	CATG	6 cut(s)	424, 457, 505, 679, 788, 882
KpnI	GGTACC	1 cut(s)	706
Kzo9I	GATC	5 cut(s)	559, 598, 732, 865, 883
Lsp1109I	GCAGC	5 cut(s)	55, 115, 455, 632, 811
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	4 cut(s)	50, 328, 550, 835
MaeIII	GTNAC	2 cut(s)	737, 847
MalI	GATC	5 cut(s)	561, 600, 734, 867, 885
MboI	GATC	5 cut(s)	559, 598, 732, 865, 883
MboII	GAAGA	2 cut(s)	269, 422
MflI	RGATCY	1 cut(s)	865
MhlI	GDGCHC	1 cut(s)	958
MluCI	AATT	4 cut(s)	814, 909, 913, 977
MlyI	GAGTC	2 cut(s)	492, 602
MseI	TTAA	6 cut(s)	111, 578, 638, 774, 912, 994
MslI	CAYNNNNRTG	2 cut(s)	327, 680
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	2 cut(s)	708, 921
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	2 cut(s)	176, 794
NciI	CCSGG	1 cut(s)	921
NcoI	CCATGG	1 cut(s)	675
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	5 cut(s)	559, 598, 732, 865, 883
NlaIII	CATG	6 cut(s)	424, 457, 505, 679, 788, 882
NlaIV	GGNNCC	3 cut(s)	99, 351, 704
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	847
NspI	RCATGY	2 cut(s)	457, 882
PaeI	GCATGC	1 cut(s)	882
PagI	TCATGA	2 cut(s)	420, 501
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	185, 308
PflFI	GACNNNGTC	1 cut(s)	667
PkrI	GCNGC	5 cut(s)	70, 130, 470, 622, 826
Ple19I	CGATCG	1 cut(s)	886
PleI	GAGTC	2 cut(s)	492, 601
PpsI	GAGTC	2 cut(s)	492, 601
PshBI	ATTAAT	1 cut(s)	912
Psp1406I	AACGTT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	706
PspEI	GGTNACC	1 cut(s)	847
PspFI	CCCAGC	2 cut(s)	131, 827
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	3 cut(s)	99, 351, 704
PspPI	GGNCC	2 cut(s)	319, 350
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	865
PsyI	GACNNNGTC	1 cut(s)	667
PvuI	CGATCG	1 cut(s)	886
RsaI	GTAC	3 cut(s)	542, 549, 704
RsaNI	GTAC	3 cut(s)	541, 548, 703
RseI	CAYNNNNRTG	2 cut(s)	327, 680
SalI	GTCGAC	1 cut(s)	661
SaqAI	TTAA	6 cut(s)	111, 578, 638, 774, 912, 994
SatI	GCNGC	5 cut(s)	69, 129, 469, 621, 825
Sau3AI	GATC	5 cut(s)	559, 598, 732, 865, 883
Sau96I	GGNCC	2 cut(s)	319, 350
SchI	GAGTC	2 cut(s)	492, 602
ScrFI	CCNGG	2 cut(s)	708, 921
SduI	GDGCHC	1 cut(s)	958
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	327, 680
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	4 cut(s)	814, 909, 913, 977
SsiI	CCGC	2 cut(s)	852, 934
StyD4I	CCNGG	2 cut(s)	706, 919
StyI	CCWWGG	3 cut(s)	91, 675, 855
TaaI	ACNGT	2 cut(s)	445, 636
TaiI	ACGT	4 cut(s)	53, 331, 553, 838
TaqI	TCGA	1 cut(s)	662
TasI	AATT	4 cut(s)	814, 909, 913, 977
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	185, 308
Tru1I	TTAA	6 cut(s)	111, 578, 638, 774, 912, 994
Tru9I	TTAA	6 cut(s)	111, 578, 638, 774, 912, 994
TscAI	CASTG	3 cut(s)	282, 450, 804
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	5 cut(s)	68, 128, 468, 620, 824
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	6 cut(s)	17, 437, 702, 762, 773, 808
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	3 cut(s)	282, 450, 804
Tth111I	GACNNNGTC	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	319
VspI	ATTAAT	1 cut(s)	912
XceI	RCATGY	2 cut(s)	457, 882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.