pycom16g02760

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0028825
Physical Location & Seq
Forward (+)
1772403 .. 1773130
728 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGAGCAGTCGAGCAGTGGAAGACGACGCACTGGCCAAAGCCGCAAGAGCTGCCGAAGCTCTTTACCTCCTCCGAGACACCTACTTTCCGGCGGACCCGGATGACAAAATCTCCAGATTAAACGCCGATTCCGATCTTGCCCTCAACCTCCTCGATTCCATTCCTCTTGAGCAAAGAAAACATCCGGCTCAACGTGCGAAATATGAATATCTGAGAGGAAAGATACTGGATGTTTTACCGAATTATAGAAAGGAAGCAGAGGATCGATCTCTCAAAAGCTGTTAA

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

5.8

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028825)

Species Orthologous Gene IDs
malus_domestica MD05G1282800.v1.1
pyrus_communis pycom16g02760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 92
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 33
AluBI AGCT 3 cut(s) 50, 59, 279
AluI AGCT 3 cut(s) 50, 59, 279
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 2 cut(s) 42, 51
BlsI GCNGC 2 cut(s) 43, 52
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse1I ACTGG 2 cut(s) 36, 231
Bse8I GATNNNNATC 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 265
BseGI GGATG 3 cut(s) 106, 181, 235
BseJI GATNNNNATC 1 cut(s) 132
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 36, 231
BseRI GAGGAG 2 cut(s) 59, 140
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 265
BsiSI CCGG 3 cut(s) 89, 98, 185
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 133, 262, 266
BspACI CCGC 2 cut(s) 42, 92
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 270
BsrI ACTGG 2 cut(s) 36, 231
BssMI GATC 3 cut(s) 133, 262, 266
BstAPI GCANNNNNTGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 3 cut(s) 106, 181, 235
BstKTI GATC 3 cut(s) 136, 265, 269
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 133, 262, 266
BstMWI GCNNNNNNNGC 5 cut(s) 41, 47, 50, 56, 194
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 265
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 265
BtsCI GGATG 3 cut(s) 106, 181, 235
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 29
Cfr13I GGNCC 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 265
CseI GACGC 1 cut(s) 35
CviJI RGCY 6 cut(s) 35, 41, 50, 59, 188, 279
CviKI_1 RGCY 6 cut(s) 35, 41, 50, 59, 188, 279
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 135, 264, 268
DpnII GATC 3 cut(s) 133, 262, 266
EaeI YGGCCR 1 cut(s) 33
EciI GGCGGA 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 94
FaiI YATR 2 cut(s) 204, 246
Fnu4HI GCNGC 2 cut(s) 42, 51
FokI GGATG 3 cut(s) 113, 168, 242
Fsp4HI GCNGC 2 cut(s) 42, 51
GluI GCNGC 2 cut(s) 42, 51
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 1 cut(s) 35
HapII CCGG 3 cut(s) 89, 98, 185
HgaI GACGC 1 cut(s) 35
HinfI GANTC 2 cut(s) 128, 155
HpaII CCGG 3 cut(s) 89, 98, 185
Hpy188I TCNGA 3 cut(s) 74, 133, 213
Hpy188III TCNNGA 2 cut(s) 114, 167
Hpy99I CGWCG 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 47, 50, 56, 194
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 193
Kzo9I GATC 3 cut(s) 133, 262, 266
LpnPI CCDG 6 cut(s) 17, 102, 111, 127, 198, 212
Lsp1109I GCAGC 1 cut(s) 37
MaeII ACGT 1 cut(s) 193
MalI GATC 3 cut(s) 135, 264, 268
MboI GATC 3 cut(s) 133, 262, 266
MboII GAAGA 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 8 cut(s) 77, 80, 152, 158, 161, 174, 209, 253
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 2 cut(s) 119, 283
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 3 cut(s) 89, 98, 185
MspR9I CCNGG 1 cut(s) 98
MwoI GCNNNNNNNGC 5 cut(s) 41, 47, 50, 56, 194
NciI CCSGG 1 cut(s) 98
NdeII GATC 3 cut(s) 133, 262, 266
NlaIV GGNNCC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 2 cut(s) 128, 155
PkrI GCNGC 2 cut(s) 43, 52
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 119, 283
SatI GCNGC 2 cut(s) 42, 51
Sau3AI GATC 3 cut(s) 133, 262, 266
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 98
SetI ASST 7 cut(s) 52, 61, 69, 83, 150, 196, 281
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 241
SsiI CCGC 2 cut(s) 42, 92
StyD4I CCNGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 10, 153, 265
TasI AATT 1 cut(s) 241
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 128, 155
Tru1I TTAA 2 cut(s) 119, 283
Tru9I TTAA 2 cut(s) 119, 283
TscAI CASTG 2 cut(s) 21, 36
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 2 cut(s) 21, 36
VpaK11BI GGWCC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.