Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0024704

Physical Location & Seq

Genomic Coordinates Forward (+)

3760381 .. 3760875

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTGAGCCAGGCTGATGATGTGGCAGGTATAATATCATCAAAAGCGGGCCTGCAGTACTTGGGACCTGAGCTGGATGCTATGAAAGCGGTTGCTGATGCTCACTCGAAGCGTTCTTTGAAGCTTTTTGAGACTGCTCTTCGTGATTTCAAGGCACAGCTAGAGGAAGACCCTATTGTCCACAGGCACCTCTCCTCCCTGTACGACACTCTGTTGGAACAGAATCTCTGCAGGTTGATCGAGCCTTTCTCAAGGGTGGAGATTGCTCACATTGCAGAACTGATTGAACTGCCAATCGACCATGTGGAGAAGAAACTGTCTCAGATGATTTTGGACAAGAAGTTTGCAGGGACTTTGGACCAGGGCGCTGGATGCCTCATCATCTTTGACGATCCCAAGACAGACGCAATATACCCTGCAACGTTGGAGACCATATCCAACATCGGCAAGGTCGTGGACAGCCTCTACGTGAGGTCTGCGAAGATAATGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

165

Amino Acids

18.13

Weight (kDa)

5.18

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	47 - 129	1.4e-21	PCI domain
RPN6_C_helix	PF18503	135 - 160	3.8e-12	26S proteasome subunit RPN6 C-terminal helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024704)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05870
rosa_samantha	Rh6CG068300 Rh6DG065100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	17, 222
AccB1I	GGYRCC	1 cut(s)	186
AciI	CCGC	2 cut(s)	47, 89
AclI	AACGTT	1 cut(s)	422
AclWI	GGATC	1 cut(s)	386
AfaI	GTAC	2 cut(s)	59, 203
AgsI	TTSAA	3 cut(s)	121, 151, 287
AjnI	CCWGG	2 cut(s)	9, 360
AluBI	AGCT	3 cut(s)	73, 124, 160
AluI	AGCT	3 cut(s)	73, 124, 160
Alw26I	GTCTC	3 cut(s)	125, 324, 422
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	3 cut(s)	49, 65, 358
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	65, 358
BanI	GGYRCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	2 cut(s)	11, 362
BcoDI	GTCTC	3 cut(s)	125, 324, 422
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	53, 229
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	17, 222
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	11, 362
Bme18I	GGWCC	2 cut(s)	65, 358
BmgT120I	GGNCC	3 cut(s)	49, 65, 358
BmiI	GGNNCC	2 cut(s)	66, 188
BmrFI	CCNGG	2 cut(s)	11, 362
BmsI	GCATC	3 cut(s)	67, 88, 362
BpiI	GAAGAC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	11, 362
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	82, 377
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	60, 335
BseRI	GAGGAG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	78, 364
BsmAI	GTCTC	3 cut(s)	125, 324, 422
BsmFI	GGGAC	2 cut(s)	78, 364
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	237, 391
BspACI	CCGC	2 cut(s)	47, 89
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	61, 334
BspLI	GGNNCC	2 cut(s)	66, 188
BspMAI	CTGCAG	2 cut(s)	57, 233
BspMI	ACCTGC	2 cut(s)	17, 222
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	237, 391
Bst2UI	CCWGG	2 cut(s)	11, 362
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	49, 53
BstDEI	CTNAG	2 cut(s)	69, 321
BstF5I	GGATG	2 cut(s)	82, 377
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	2 cut(s)	240, 394
BstMAI	GTCTC	3 cut(s)	125, 324, 422
BstMBI	GATC	2 cut(s)	237, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 272, 372
BstNI	CCWGG	2 cut(s)	11, 362
BstSCI	CCNGG	2 cut(s)	9, 360
BstSFI	CTRYAG	2 cut(s)	53, 229
BstV2I	GAAGAC	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	82, 377
BveI	ACCTGC	2 cut(s)	17, 222
Cac8I	GCNNGC	2 cut(s)	49, 53
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	49, 65, 358
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	58, 202
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	8 cut(s)	9, 14, 51, 73, 124, 160, 244, 462
CviKI_1	RGCY	8 cut(s)	9, 14, 51, 73, 124, 160, 244, 462
CviQI	GTAC	2 cut(s)	58, 202
DdeI	CTNAG	2 cut(s)	69, 321
DpnI	GATC	2 cut(s)	239, 393
DpnII	GATC	2 cut(s)	237, 391
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	2 cut(s)	65, 358
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	9, 360
FaeI	CATG	1 cut(s)	305
FaiI	YATR	5 cut(s)	32, 83, 303, 412, 434
FaqI	GGGAC	2 cut(s)	78, 364
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	40
FokI	GGATG	2 cut(s)	89, 384
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	51
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	181, 457
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	181, 457
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	2 cut(s)	422, 468
HpyCH4V	TGCA	5 cut(s)	55, 231, 275, 347, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 272, 372
HpyF3I	CTNAG	2 cut(s)	69, 321
HpySE526I	ACGT	2 cut(s)	422, 468
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	237, 391
LguI	GCTCTTC	1 cut(s)	144
LweI	GCATC	3 cut(s)	67, 88, 362
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	2 cut(s)	422, 468
MalI	GATC	2 cut(s)	239, 393
MboI	GATC	2 cut(s)	237, 391
MboII	GAAGA	4 cut(s)	131, 179, 322, 493
MmeI	TCCRAC	3 cut(s)	195, 405, 462
MnlI	CCTC	6 cut(s)	157, 200, 205, 386, 465, 473
MspR9I	CCNGG	2 cut(s)	11, 362
MvaI	CCWGG	2 cut(s)	11, 362
MwoI	GCNNNNNNNGC	3 cut(s)	86, 272, 372
NdeII	GATC	2 cut(s)	237, 391
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	66, 188
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	9, 360
PspGI	CCWGG	2 cut(s)	9, 360
PspN4I	GGNNCC	2 cut(s)	66, 188
PspPI	GGNCC	3 cut(s)	49, 65, 358
PspPPI	RGGWCCY	1 cut(s)	65
PstI	CTGCAG	2 cut(s)	57, 233
RsaI	GTAC	2 cut(s)	59, 203
RsaNI	GTAC	2 cut(s)	58, 202
SapI	GCTCTTC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	237, 391
Sau96I	GGNCC	3 cut(s)	49, 65, 358
ScaI	AGTACT	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	11, 362
SfaNI	GCATC	3 cut(s)	67, 88, 362
SfcI	CTRYAG	2 cut(s)	53, 229
SinI	GGWCC	2 cut(s)	65, 358
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SsiI	CCGC	2 cut(s)	47, 89
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	9, 360
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	2 cut(s)	425, 471
TaqI	TCGA	3 cut(s)	107, 240, 297
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	65, 358
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.