Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0024704

Physical Location & Seq

Genomic Coordinates Forward (+)

6742931 .. 6743599

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG068300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGCCTCCAGATCAACAGAGAACTATACATTTGCAGAGTGGGATACTTCATGCTGAAGAAAAGGACTACAAAACTGCTTATAGTTTACTTCTTTGAAGCATTTGAAGCCTTCAATGCTCTTGAAGATCCTCGAGCTGTTTTTAGCCTCAAGTATATGTTGCTTTGCAAGATCATGGTGAACCACGCAGATGATGTTGCAGGAATAATATCATCTAAAGCAGGCCTACGATATGTAGGGCCTGAGCTGGATGCCATGAAAGCAGTGGCTGATGCTTACTCGAAGCGTTCTTTAATGCTGTTTGAGACTGCTGTTCGTGATTTCAAGGCCCAGCTAGATGAAGATCCAATTGTCCACAGGCACCTCTCCTCTCTGTATGACACTCTCTTGGAACAAAACCTCTGTAGATTGATTGAGCCTTACAAAAGGGTGGAGATCGCTCATATTGCAGAGCTGATTGAACTGCCTATCGATCATGTGGAGAAGAAATTGTCTCAGATGATTTTAGACAAGAAGTTTGCTGGAACTTTGGATCAAGGTGCTGGTTGCCTCATCGTTTTTGAGGATCTCAATACAGATGCTATATACCCGGCAGCGTTGGAAACAATATCCAACATGGGCAAGGTTGTTGATAGCTTGTATGTGAGGTCTGCCAAGATAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048863 GO:0048869 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

222

Amino Acids

25.22

Weight (kDa)

5.98

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	105 - 187	2.7e-21	PCI domain
RPN6_C_helix	PF18503	193 - 218	2.2e-13	26S proteasome subunit RPN6 C-terminal helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024704)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05870
rosa_samantha	Rh6CG068300 Rh6DG065100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	360
AclWI	GGATC	4 cut(s)	122, 338, 540, 573
AcuI	CTGAAG	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	98, 107, 115, 125, 325, 461
AluBI	AGCT	5 cut(s)	137, 247, 334, 454, 636
AluI	AGCT	5 cut(s)	137, 247, 334, 454, 636
Alw26I	GTCTC	2 cut(s)	299, 498
AlwI	GGATC	4 cut(s)	122, 338, 540, 573
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	223, 239, 327
ApeKI	GCWGC	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspS9I	GGNCC	2 cut(s)	239, 328
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	299, 498
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	239, 328
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	3 cut(s)	241, 262, 568
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	471
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	234, 509
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	605
BseYI	CCCAGC	1 cut(s)	330
BshFI	GGCC	3 cut(s)	225, 241, 329
BshNI	GGYRCC	1 cut(s)	360
BshVI	ATCGAT	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	590
BsmAI	GTCTC	2 cut(s)	299, 498
BsnI	GGCC	3 cut(s)	225, 241, 329
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
BspANI	GGCC	3 cut(s)	225, 241, 329
BspCNI	CTCAG	2 cut(s)	235, 508
BspDI	ATCGAT	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	362
BspPI	GGATC	4 cut(s)	122, 338, 540, 573
BspT107I	GGYRCC	1 cut(s)	360
BssMI	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	243, 495
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	8 cut(s)	15, 130, 174, 346, 438, 475, 535, 568
BstMAI	GTCTC	2 cut(s)	299, 498
BstMBI	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 116, 260, 446
BstSCI	CCNGG	1 cut(s)	588
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	605
BstX2I	RGATCY	3 cut(s)	127, 343, 565
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	3 cut(s)	127, 343, 565
Bsu15I	ATCGAT	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	225, 241, 329
BsuTUI	ATCGAT	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	239, 328
ClaI	ATCGAT	1 cut(s)	471
CviAII	CATG	6 cut(s)	52, 175, 256, 476, 616, 666
DdeI	CTNAG	2 cut(s)	243, 495
DpnI	GATC	8 cut(s)	14, 129, 173, 345, 437, 474, 534, 567
DpnII	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
Eco147I	AGGCCT	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	239
FaeI	CATG	6 cut(s)	55, 178, 259, 479, 619, 669
FatI	CATG	6 cut(s)	51, 174, 255, 475, 615, 665
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	1 cut(s)	594
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	225, 241, 329
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	6 cut(s)	55, 178, 259, 479, 619, 669
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	88, 181, 355
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	3 cut(s)	10, 122, 317
Hpy8I	GTNNAC	3 cut(s)	88, 181, 355
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	36, 168, 200, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 116, 260, 446
HpyF3I	CTNAG	2 cut(s)	243, 495
Hsp92II	CATG	6 cut(s)	55, 178, 259, 479, 619, 669
Kzo9I	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	3 cut(s)	241, 262, 568
MaeI	CTAG	1 cut(s)	335
MalI	GATC	8 cut(s)	14, 129, 173, 345, 437, 474, 534, 567
MboI	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
MboII	GAAGA	4 cut(s)	70, 137, 353, 496
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	3 cut(s)	127, 343, 565
MluCI	AATT	2 cut(s)	348, 488
MmeI	TCCRAC	2 cut(s)	579, 636
MnlI	CCTC	9 cut(s)	17, 141, 158, 374, 379, 410, 556, 560, 639
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	107, 116, 260, 446
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
NlaIII	CATG	6 cut(s)	55, 178, 259, 479, 619, 669
NlaIV	GGNNCC	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	2 cut(s)	239, 328
PspXI	VCTCGAGB	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	3 cut(s)	127, 343, 565
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	8 cut(s)	12, 127, 171, 343, 435, 472, 532, 565
Sau96I	GGNCC	2 cut(s)	239, 328
ScrFI	CCNGG	1 cut(s)	590
SfaNI	GCATC	3 cut(s)	241, 262, 568
SfcI	CTRYAG	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	132, 149
SmoI	CTYRAG	2 cut(s)	132, 149
Sse9I	AATT	2 cut(s)	348, 488
SseBI	AGGCCT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	335
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	588
TaqI	TCGA	3 cut(s)	133, 281, 471
TasI	AATT	2 cut(s)	348, 488
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	40, 272, 354
TspRI	CASTG	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	132
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.