Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0023583

Physical Location & Seq

Genomic Coordinates Forward (+)

4746506 .. 4747395

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGACAACAAACTCGTCCAGCTTTATGCATTTGAAAAATCAAGAAAACCAGGAAGATTTGTAGATGTGGTTTATCACGAAAATGCTCGCGTTCTTCTTCATGATGAGAACATTTACCGCATCGATTGTGCATCCTCTCCAACCCGGGTGTCTATTCAGCTAATGGATTTTGGGCATGATAAGCCTGAAATGACTGCTGTTTCTATGGACCCTAATTTTTCTGCGTATCTGCATGATGAATTCCTTTCAGTTCTTCCTGACAAAAAGGAGAAGTCTGGGATCTTCTTGATGAGGAACAAACGTAAGTATGGCAGCGATGATTTGTCTGCTATCTGTGAGGCCATGGAAGGACTAAAAGTCGCTAATGGTCTGGAGTGTAAGATCGCTTACCAATCATCCAAGGTCTCATACGTTTTAGATACAGAAGACTTTCTGTTTCGTACACAGAAGAAAAGGAAAAGTTTGCACCAGAACAGTTCATGCCATAACCTGGCTAGGTCTTCTAACGGTTCTAGTAGAGTAGAGCGATTTCAGCGGTTGCTTTCTGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

185

Amino Acids

21.05

Weight (kDa)

8.83

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	4 - 145	3.5e-16	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0023583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15020 AT5G15020
pyrus_communis	pycom16g07270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	118, 535
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	1 cut(s)	35
AhdI	GACNNNNNGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	49, 489
AluBI	AGCT	2 cut(s)	22, 160
AluI	AGCT	2 cut(s)	22, 160
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	2 cut(s)	145, 146
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	208
BbsI	GAAGAC	2 cut(s)	432, 492
BbvI	GCAGC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	51, 491
BcnI	CCSGG	2 cut(s)	145, 146
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	495, 513
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	4 cut(s)	51, 145, 146, 491
Bme18I	GGWCC	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	4 cut(s)	51, 145, 146, 491
BmsI	GCATC	2 cut(s)	129, 140
BpiI	GAAGAC	2 cut(s)	432, 492
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	2 cut(s)	145, 146
Bsa29I	ATCGAT	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	3 cut(s)	144, 342, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	51, 491
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	144, 342, 399
BseGI	GGATG	2 cut(s)	131, 395
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	279, 381
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	118, 535
BspANI	GGCC	1 cut(s)	341
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	2 cut(s)	100, 551
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	409
BssECI	CCNNGG	3 cut(s)	144, 342, 399
BssMI	GATC	2 cut(s)	279, 381
BssT1I	CCWWGG	2 cut(s)	342, 399
Bst2UI	CCWGG	2 cut(s)	51, 491
Bst4CI	ACNGT	2 cut(s)	476, 509
BstC8I	GCNNGC	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	131, 395
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	282, 384
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	279, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 532
BstNI	CCWGG	2 cut(s)	51, 491
BstSCI	CCNGG	4 cut(s)	49, 143, 144, 489
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	2 cut(s)	432, 492
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	131, 395
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	2 cut(s)	100, 551
Cfr13I	GGNCC	1 cut(s)	208
Cfr9I	CCCGGG	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	6 cut(s)	101, 176, 233, 343, 480, 552
CviJI	RGCY	6 cut(s)	22, 160, 184, 341, 494, 549
CviKI_1	RGCY	6 cut(s)	22, 160, 184, 341, 494, 549
CviQI	GTAC	1 cut(s)	441
DpnI	GATC	2 cut(s)	281, 383
DpnII	GATC	2 cut(s)	279, 381
DriI	GACNNNNNGTC	1 cut(s)	356
Eam1105I	GACNNNNNGTC	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	342, 399
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	49, 489
EcoT14I	CCWWGG	2 cut(s)	342, 399
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	342, 399
FaeI	CATG	6 cut(s)	104, 179, 236, 346, 483, 555
FatI	CATG	6 cut(s)	100, 175, 232, 342, 479, 551
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	2 cut(s)	118, 382
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	2 cut(s)	495, 513
GluI	GCNGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	6 cut(s)	104, 179, 236, 346, 483, 555
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188III	TCNNGA	7 cut(s)	42, 77, 101, 257, 286, 371, 552
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	476, 509
HpyCH4IV	ACGT	2 cut(s)	301, 411
HpyCH4V	TGCA	4 cut(s)	29, 131, 232, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 532
HpySE526I	ACGT	2 cut(s)	301, 411
Hsp92II	CATG	6 cut(s)	104, 179, 236, 346, 483, 555
Kzo9I	GATC	2 cut(s)	279, 381
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	129, 140
MaeI	CTAG	2 cut(s)	495, 513
MaeII	ACGT	2 cut(s)	301, 411
MalI	GATC	2 cut(s)	281, 383
MboI	GATC	2 cut(s)	279, 381
MboII	GAAGA	8 cut(s)	66, 86, 89, 245, 274, 437, 460, 492
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	2 cut(s)	214, 239
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	145, 285, 331
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	4 cut(s)	51, 145, 146, 491
MvaI	CCWGG	2 cut(s)	51, 491
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	181, 532
NciI	CCSGG	2 cut(s)	145, 146
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	2 cut(s)	279, 381
NlaIII	CATG	6 cut(s)	104, 179, 236, 346, 483, 555
NlaIV	GGNNCC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	31
PagI	TCATGA	2 cut(s)	100, 551
PdmI	GAANNNNTTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	49, 489
PspGI	CCWGG	2 cut(s)	49, 489
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	81
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	279, 381
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	4 cut(s)	51, 145, 146, 491
SetI	ASST	7 cut(s)	24, 162, 304, 405, 414, 492, 500
SfaNI	GCATC	2 cut(s)	129, 140
SinI	GGWCC	1 cut(s)	208
SmaI	CCCGGG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	214, 239
SsiI	CCGC	2 cut(s)	118, 535
SspMI	CTAG	2 cut(s)	495, 513
StyD4I	CCNGG	4 cut(s)	49, 143, 144, 489
StyI	CCWWGG	2 cut(s)	342, 399
TaaI	ACNGT	2 cut(s)	476, 509
TaiI	ACGT	2 cut(s)	304, 414
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	214, 239
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	89, 252, 468
TspMI	CCCGGG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	495, 513
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.