Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029476

Physical Location & Seq

Genomic Coordinates Reverse (-)

10346821 .. 10347063

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCGTCCATGGCCACCCTTTTCGTCAACACCCCCTACCCCTCTCACTCATTCCCCAAGCCGTCATCTGCCCATTTCGCCCCCGTCCTGAAGTTCTCAACCCATCTCGGGTCCAAGCCCAGGACCCGCCAAAGGCTCCGAATTTCAAACGAGTTGATTGAGCCGGACGGCGGGAAGCTAGTGGAGCTCTTCGTCGAGGAGTCGAAGAAAGGCGAGACGAAGAAAGAGGCGGCGCCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0001887 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009719 GO:0009725 GO:0009735 GO:0009970 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0070206 GO:0070566 GO:0071496 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

81

Amino Acids

8.9

Weight (kDa)

9.7

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029476)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g14310
rosa_samantha	Rh7DG477100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AciI	CCGC	3 cut(s)	127, 171, 230
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	5, 233
AfiI	CCNNNNNNNGG	4 cut(s)	108, 120, 132, 170
AgsI	TTSAA	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	2 cut(s)	178, 187
AluI	AGCT	2 cut(s)	178, 187
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	111, 123
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	111, 123
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	3 cut(s)	46, 184, 220
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	2 cut(s)	111, 123
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	111, 123
BmiI	GGNNCC	4 cut(s)	112, 125, 137, 234
BmrFI	CCNGG	1 cut(s)	121
BsaHI	GRCGYC	2 cut(s)	5, 233
BsaJI	CCNNGG	2 cut(s)	9, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 120, 132, 170
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	9, 119
BseLI	CCNNNNNNNGG	4 cut(s)	108, 120, 132, 170
BseRI	GAGGAG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	4 cut(s)	108, 120, 132, 170
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	127, 171, 230
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	4 cut(s)	112, 125, 137, 234
BspQI	GCTCTTC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	9, 119
BssNI	GRCGYC	2 cut(s)	5, 233
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	2 cut(s)	5, 233
BstDSI	CCRYGG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 77, 184
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	9
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	111, 123
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	7 cut(s)	14, 61, 118, 136, 163, 178, 187
CviKI_1	RGCY	7 cut(s)	14, 61, 118, 136, 163, 178, 187
DinI	GGCGCC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	111, 123
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	189
EgeI	GGCGCC	1 cut(s)	234
EheI	GGCGCC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	134, 164
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	2 cut(s)	5, 233
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 77, 184
Hsp92I	GRCGYC	2 cut(s)	5, 233
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	233
KasI	GGCGCC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	2 cut(s)	141, 184
LpnPI	CCDG	4 cut(s)	101, 106, 133, 177
MaeI	CTAG	1 cut(s)	179
MboII	GAAGA	3 cut(s)	181, 217, 232
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	14
Mly113I	GGCGCC	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	3 cut(s)	52, 190, 220
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	11, 77, 184
NarI	GGCGCC	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	9
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	4 cut(s)	112, 125, 137, 234
PciSI	GCTCTTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	208
PluTI	GGCGCC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	112, 125, 137, 234
PspPI	GGNCC	2 cut(s)	111, 123
PspPPI	RGGWCCY	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	241
SatI	GCNGC	1 cut(s)	231
Sau96I	GGNCC	2 cut(s)	111, 123
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	2 cut(s)	180, 189
SfoI	GGCGCC	1 cut(s)	234
SinI	GGWCC	2 cut(s)	111, 123
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	3 cut(s)	127, 171, 230
SspDI	GGCGCC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	2 cut(s)	195, 203
TasI	AATT	1 cut(s)	141
TauI	GCSGC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	111, 123
XapI	RAATTY	1 cut(s)	141
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.