Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0029476

Physical Location & Seq

Genomic Coordinates Forward (+)

68138792 .. 68139130

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG477100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGTCCATGGCTACCTTCATCGCCCAAACCCCCTACCCACATCACTCTTTCCCCAAAAAGTTCCACACCCATTTCGCCCCGACCCTCAAGCTCTCGCTCCGACCCGTTTCCACCCCCAAGACCCGCCAAAGGCTCCGAATTTCGAGCGCGCTGATCGAACCCGACGGCGGGAAACTCGTCGAGCTTTTCGTGCCGGAGTCGGCGAAGGCCGAGAAAAAGAGAGAGGCGGCGACGCTGCCGAGAATCAAGTGCTGGTCGAGTGTTCATGTGATCAGCGAAGGCTGGTCGATCTTGAATGGGTTCATGAGAGAATCGATCTTGAATGGGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0001887 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009719 GO:0009725 GO:0009735 GO:0009970 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0070206 GO:0070566 GO:0071496 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

112

Amino Acids

12.62

Weight (kDa)

10.17

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_2	PF14306	53 - 107	3.4e-06	PUA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029476)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g14310
rosa_samantha	Rh7DG477100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	127, 171, 230
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	132, 170, 171
AgsI	TTSAA	2 cut(s)	298, 325
AluBI	AGCT	2 cut(s)	94, 187
AluI	AGCT	2 cut(s)	94, 187
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	302, 329
AspLEI	GCGC	2 cut(s)	152, 154
BbvI	GCAGC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	273
BisI	GCNGC	2 cut(s)	231, 239
BlsI	GCNGC	2 cut(s)	232, 240
BmiI	GGNNCC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 170, 171
BseCI	ATCGAT	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	132, 170, 171
BsePI	GCGCGC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	132, 170, 171
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	4 cut(s)	156, 273, 291, 318
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	127, 171, 230
BspANI	GGCC	1 cut(s)	212
BspDI	ATCGAT	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	9
BssHII	GCGCGC	1 cut(s)	150
BssMI	GATC	4 cut(s)	156, 273, 291, 318
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	152, 154
BstKTI	GATC	4 cut(s)	159, 276, 294, 321
BstMBI	GATC	4 cut(s)	156, 273, 291, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 193
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	212
BsuTUI	ATCGAT	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	152
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	2 cut(s)	152, 154
ClaI	ATCGAT	1 cut(s)	317
CseI	GACGC	1 cut(s)	244
CviAII	CATG	4 cut(s)	10, 269, 307, 334
CviJI	RGCY	6 cut(s)	14, 94, 136, 187, 212, 285
CviKI_1	RGCY	6 cut(s)	14, 94, 136, 187, 212, 285
DpnI	GATC	4 cut(s)	158, 275, 293, 320
DpnII	GATC	4 cut(s)	156, 273, 291, 318
Eco130I	CCWWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 272, 310, 337
FaiI	YATR	4 cut(s)	11, 270, 308, 335
FatI	CATG	4 cut(s)	9, 268, 306, 333
FauI	CCCGC	2 cut(s)	134, 164
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	231, 239
Fsp4HI	GCNGC	2 cut(s)	231, 239
GlaI	GCGC	2 cut(s)	151, 153
GluI	GCNGC	2 cut(s)	231, 239
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	2 cut(s)	152, 154
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	13, 272, 310, 337
Hin6I	GCGC	2 cut(s)	150, 152
HinP1I	GCGC	2 cut(s)	150, 152
HinfI	GANTC	3 cut(s)	200, 246, 314
HpaII	CCGG	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	104, 140
Hpy188III	TCNNGA	3 cut(s)	295, 307, 322
Hpy99I	CGWCG	3 cut(s)	170, 185, 238
HpyAV	CCTTC	3 cut(s)	28, 202, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 193
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	13, 272, 310, 337
HspAI	GCGC	2 cut(s)	150, 152
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	4 cut(s)	156, 273, 291, 318
LmnI	GCTCC	2 cut(s)	105, 141
LpnPI	CCDG	3 cut(s)	210, 241, 271
Lsp1109I	GCAGC	1 cut(s)	225
MalI	GATC	4 cut(s)	158, 275, 293, 320
MboI	GATC	4 cut(s)	156, 273, 291, 318
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	98, 220
MroXI	GAANNNNTTC	2 cut(s)	302, 329
MspI	CCGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	11, 193
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	156, 273, 291, 318
NlaIII	CATG	4 cut(s)	13, 272, 310, 337
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	2 cut(s)	238, 267
PagI	TCATGA	1 cut(s)	306
PauI	GCGCGC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	302, 329
PfeI	GAWTC	2 cut(s)	246, 314
PkrI	GCNGC	2 cut(s)	232, 240
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	137
PteI	GCGCGC	1 cut(s)	150
SatI	GCNGC	2 cut(s)	231, 239
Sau3AI	GATC	4 cut(s)	156, 273, 291, 318
SchI	GAGTC	1 cut(s)	209
SetI	ASST	3 cut(s)	20, 96, 189
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	3 cut(s)	127, 171, 230
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	6 cut(s)	146, 159, 183, 260, 290, 317
TasI	AATT	1 cut(s)	141
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	246, 314
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	10, 257, 295, 322
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	2 cut(s)	302, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.