pycom16g15780
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0022568
Physical Location & Seq
Forward (+)
11706574 .. 11707254
681 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15780.1

Sequence Viewer

Length: 681 bp
ATGCGCAAGGGTACAAGATCGCTTGGGGCAGATGTGCCAAGTGAGCGAGAAATCAACCGCCTTGCTGCCAGATCAGAAGAGGAGTTCTGGCTGTTTGAGAAAATGGACGAGGATAGAAGGCGAAAAGAGAACTACAGATCTCGCCTTATGGAAGACCATGAGGTTCCTGAGTGGGCATATTCAACACCTGATAAGCAAATTGCTACGAAAGGCTTTGACAGTGGCAGTATCACAGGAAAGCGCAGGAGAAAGGCGGTACAGTCTTATTCTGATGGCCTTAGTGATTTACAGTGGATGAAAGCTGTGGAAAATGGAGCAGACATATCGAATCTTTCAGGCAGAGTAAAAAAGAGAAATCACGCTCAATCAGATGGCGTTGTATTAGTCAGTGGTAATGCAGGAACAGAGGAAAAAGTTACAAAATTGATTCCAAATGTTCCATTGGTGAGAGAGGGAGATAGTGAAGATACCTACGCGTTGACCCCAGCCTCGAAGAGACACAAGTCTGAAGGGCCTAAAATAGAGAAACACGAAAGTCACGCAGCTGGAGGAAGTGGTTTGAATGGGCCCATCTTGACGTTCAAGATACATCGGAAGAAGAGATCAAGCTATGTTAACCCAAGTTCATCCTCTGATGGCAGAGGGCAAAATGCCAATGTCAGAGGAAATGGATGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

227

Amino Acids

25.15

Weight (kDa)

9.61

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SnAC PF14619 37 - 99 8.2e-10 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022568)

Species Orthologous Gene IDs
pyrus_communis pycom16g15780
rosa_chinensis RchiOBHm_Chr4g0417031 RchiOBHm_Chr4g0417081
rosa_multiflora Rmu_sc0033226.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccII CGCG 1 cut(s) 476
AciI CCGC 2 cut(s) 58, 254
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 2 cut(s) 13, 258
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 3 cut(s) 183, 562, 583
AluBI AGCT 3 cut(s) 302, 545, 609
AluI AGCT 3 cut(s) 302, 545, 609
Alw26I GTCTC 1 cut(s) 490
AoxI GGCC 3 cut(s) 274, 512, 566
ApaI GGGCCC 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 65, 542
AspLEI GCGC 2 cut(s) 6, 243
AspS9I GGNCC 3 cut(s) 512, 566, 567
AsuHPI GGTGA 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 52, 554
BccI CCATC 5 cut(s) 266, 365, 578, 629, 666
BcgI CGANNNNNNTGC 2 cut(s) 306, 340
BcoDI GTCTC 1 cut(s) 490
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 137
BisI GCNGC 2 cut(s) 66, 543
BlsI GCNGC 2 cut(s) 67, 544
BmgT120I GGNCC 3 cut(s) 512, 566, 567
BmiI GGNNCC 2 cut(s) 165, 568
BoxI GACNNNNGTC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 567
BseGI GGATG 3 cut(s) 300, 626, 677
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 2 cut(s) 52, 554
BseYI CCCAGC 1 cut(s) 484
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 3 cut(s) 276, 514, 568
BsmAI GTCTC 1 cut(s) 490
BsnI GGCC 3 cut(s) 276, 514, 568
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 17, 71, 137, 602
BspACI CCGC 2 cut(s) 58, 254
BspANI GGCC 3 cut(s) 276, 514, 568
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 2 cut(s) 165, 568
BssMI GATC 4 cut(s) 17, 71, 137, 602
Bst4CI ACNGT 3 cut(s) 221, 261, 291
Bst6I CTCTTC 3 cut(s) 72, 488, 593
BstDEI CTNAG 2 cut(s) 168, 278
BstF5I GGATG 3 cut(s) 300, 626, 677
BstFNI CGCG 1 cut(s) 476
BstHHI GCGC 2 cut(s) 6, 243
BstKTI GATC 4 cut(s) 20, 74, 140, 605
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 4 cut(s) 17, 71, 137, 602
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstPAI GACNNNNGTC 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 2 cut(s) 52, 554
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 3 cut(s) 276, 514, 568
BtsCI GGATG 3 cut(s) 300, 626, 677
BtsIMutI CAGTG 3 cut(s) 226, 296, 394
CfoI GCGC 2 cut(s) 6, 243
Cfr13I GGNCC 3 cut(s) 512, 566, 567
Csp6I GTAC 2 cut(s) 12, 257
CviAII CATG 1 cut(s) 158
CviQI GTAC 2 cut(s) 12, 257
DdeI CTNAG 2 cut(s) 168, 278
DpnI GATC 4 cut(s) 19, 73, 139, 604
DpnII GATC 4 cut(s) 17, 71, 137, 602
Eam1104I CTCTTC 3 cut(s) 72, 488, 593
EarI CTCTTC 3 cut(s) 72, 488, 593
Eco24I GRGCYC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 570
FaeI CATG 1 cut(s) 161
FaiI YATR 5 cut(s) 149, 159, 178, 323, 612
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 66, 543
FokI GGATG 2 cut(s) 307, 613
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 2 cut(s) 66, 543
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 242
GluI GCNGC 2 cut(s) 66, 543
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 3 cut(s) 276, 514, 568
HhaI GCGC 2 cut(s) 6, 243
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 2 cut(s) 4, 241
HinP1I GCGC 2 cut(s) 4, 241
HincII GTYRAC 2 cut(s) 480, 616
HindII GTYRAC 2 cut(s) 480, 616
HinfI GANTC 2 cut(s) 328, 427
HpaI GTTAAC 1 cut(s) 616
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 2 cut(s) 480, 616
Hpy188I TCNGA 7 cut(s) 76, 271, 370, 508, 594, 634, 662
Hpy188III TCNNGA 3 cut(s) 167, 574, 583
Hpy8I GTNNAC 2 cut(s) 480, 616
HpyAV CCTTC 2 cut(s) 111, 503
HpyCH4III ACNGT 3 cut(s) 221, 261, 291
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 168, 278
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 2 cut(s) 4, 241
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 4 cut(s) 17, 71, 137, 602
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 2 cut(s) 52, 554
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 2 cut(s) 415, 536
MalI GATC 4 cut(s) 19, 73, 139, 604
MboI GATC 4 cut(s) 17, 71, 137, 602
MboII GAAGA 6 cut(s) 89, 164, 476, 505, 607, 610
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 2 cut(s) 198, 422
MluI ACGCGT 1 cut(s) 474
MseI TTAA 2 cut(s) 615, 679
MspA1I CMGCKG 1 cut(s) 545
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 4 cut(s) 17, 71, 137, 602
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 165, 568
NmuCI GTSAC 1 cut(s) 536
NsbI TGCGCA 1 cut(s) 5
PfeI GAWTC 2 cut(s) 328, 427
PkrI GCNGC 2 cut(s) 67, 544
PshAI GACNNNNGTC 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 165, 568
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 512, 566, 567
PsuI RGATCY 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 13, 258
RsaNI GTAC 2 cut(s) 12, 257
SaqAI TTAA 2 cut(s) 615, 679
SatI GCNGC 2 cut(s) 66, 543
Sau3AI GATC 4 cut(s) 17, 71, 137, 602
Sau96I GGNCC 3 cut(s) 512, 566, 567
SduI GDGCHC 1 cut(s) 570
SetI ASST 7 cut(s) 165, 190, 304, 473, 547, 581, 611
SfcI CTRYAG 1 cut(s) 133
Sse9I AATT 2 cut(s) 198, 422
SsiI CCGC 2 cut(s) 58, 254
TaaI ACNGT 3 cut(s) 221, 261, 291
TaiI ACGT 1 cut(s) 581
TaqI TCGA 2 cut(s) 326, 491
TasI AATT 2 cut(s) 198, 422
TfiI GAWTC 2 cut(s) 328, 427
Tru1I TTAA 2 cut(s) 615, 679
Tru9I TTAA 2 cut(s) 615, 679
TscAI CASTG 3 cut(s) 226, 296, 394
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 2 cut(s) 65, 542
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 311, 615
TspRI CASTG 3 cut(s) 226, 296, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.