Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029478

Physical Location & Seq

Genomic Coordinates Forward (+)

13026491 .. 13036340

Gene Structure 9850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGGTATAACCGTCTGAATGAATATTTGACAAGTCAGGGCTATGTGAACAATGAACTATGCCCATGCGTGTTCATTAAGAAGTCACATTCTGAATTTGTGATCGTTGAAGTTTATGCCGACAACATGAACCTCATTGGAACTCTCACAGAGCTTAAGGAAATTGTCGTCCACTTGAAATTGGAATTTGAGATGAATGATCTTGGGAAAACTCAATATTGTCTTCGCCTGGAGATCGAGCATTGTTCCGATGGAATCCTAGTGTTTGTGTTCGTGGTTCAGATCTGTTGGCTCTTCTCCGCTGTTGAGGCTTTGGTGGCGAAAATTGGTTGGGGCTTTTCCTTGTTGCAGGTGCTGCAATTACAACAAATAAATAAAAAGAAACCAACAAAAACTCCTATATCCAATAAGGCGTCCAGGTTCATCCTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0001887 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009719 GO:0009725 GO:0009735 GO:0009970 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0070206 GO:0070566 GO:0071496 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

145

Amino Acids

16.64

Weight (kDa)

6.81

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	1 - 87	3e-08	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029478)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g16990
rosa_wichuraiana	Rw7G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	340
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	95, 185
AcyI	GRCGYC	1 cut(s)	413
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	110, 178
AjnI	CCWGG	2 cut(s)	228, 416
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	95, 185
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	230, 418
BfaI	CTAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	230, 418
BmrFI	CCNGG	2 cut(s)	230, 418
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
BseBI	CCWGG	2 cut(s)	230, 418
BseGI	GGATG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	102, 199, 234, 282
BspACI	CCGC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	299
BspTI	CTTAAG	1 cut(s)	155
BssMI	GATC	4 cut(s)	102, 199, 234, 282
BssNI	GRCGYC	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	230, 418
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	4 cut(s)	105, 202, 237, 285
BstMBI	GATC	4 cut(s)	102, 199, 234, 282
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 317, 355
BstNI	CCWGG	2 cut(s)	230, 418
BstSCI	CCNGG	2 cut(s)	228, 416
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	355
CseI	GACGC	1 cut(s)	402
CviAII	CATG	2 cut(s)	66, 127
CviJI	RGCY	5 cut(s)	42, 154, 292, 311, 336
CviKI_1	RGCY	5 cut(s)	42, 154, 292, 311, 336
DpnI	GATC	4 cut(s)	104, 201, 236, 284
DpnII	GATC	4 cut(s)	102, 199, 234, 282
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	228, 416
FaeI	CATG	2 cut(s)	69, 130
FaiI	YATR	7 cut(s)	9, 45, 61, 67, 117, 128, 401
FatI	CATG	2 cut(s)	65, 126
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	69, 130
HinfI	GANTC	1 cut(s)	255
Hpy166II	GTNNAC	2 cut(s)	49, 172
Hpy188I	TCNGA	4 cut(s)	18, 94, 250, 282
Hpy8I	GTNNAC	2 cut(s)	49, 172
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	349, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 317, 355
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	69, 130
Kzo9I	GATC	4 cut(s)	102, 199, 234, 282
LguI	GCTCTTC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	23, 215, 242, 335, 403, 430
Lsp1109I	GCAGC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	4 cut(s)	104, 201, 236, 284
MboI	GATC	4 cut(s)	102, 199, 234, 282
MboII	GAAGA	2 cut(s)	215, 286
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	6 cut(s)	95, 162, 179, 185, 324, 359
MnlI	CCTC	2 cut(s)	143, 301
MseI	TTAA	2 cut(s)	78, 156
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	230, 418
MvaI	CCWGG	2 cut(s)	230, 418
MwoI	GCNNNNNNNGC	3 cut(s)	308, 317, 355
NdeII	GATC	4 cut(s)	102, 199, 234, 282
NlaIII	CATG	2 cut(s)	69, 130
NmuCI	GTSAC	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	228, 416
PspGI	CCWGG	2 cut(s)	228, 416
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	78, 156
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	102, 199, 234, 282
ScrFI	CCNGG	2 cut(s)	230, 418
SetI	ASST	4 cut(s)	135, 156, 354, 422
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	95, 162, 179, 185, 324, 359
SsiI	CCGC	1 cut(s)	300
SspI	AATATT	2 cut(s)	26, 218
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	228, 416
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	237
TasI	AATT	6 cut(s)	95, 162, 179, 185, 324, 359
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	78, 156
Tru9I	TTAA	2 cut(s)	78, 156
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	6 cut(s)	36, 64, 69, 143, 209, 412
Vha464I	CTTAAG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	95, 185
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.