Rw7G035280

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0029478
Physical Location & Seq
Forward (+)
52569577 .. 52571813
2237 bp
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UTR
Exon/CDS
Intron
Rw7G035280.1

Sequence Viewer

Length: 273 bp
ATGTACCATCCTATGCAAAGGACACTAAAGAAAATATACCATTCTTGCAAAGAATCCAAGGCGATCTCTTTACCGCTAGATTTGCGGATTGTCACTTCGATGAGACAGTCTTCCCTTTATGTCGATGACATGAACCTAATTGGAACTCTAGATGAGTTGAAGGAAACTGCTAAATACTTGAAATCCGAATTTGAGATGAAAGATCTTGGGAAAACACGGTTTTGTCTCGGTTTAGAACTCGAGCACCGTAGTGATGGCATTTTGATCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

90

Amino Acids

10.5

Weight (kDa)

7.8

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 38 - 89 4.2e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029478)

Species Orthologous Gene IDs
pyrus_communis pycom16g16990
rosa_wichuraiana Rw7G035280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 74, 85
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 160, 181
AleI CACNNNNGTG 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 97, 230
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 239
ApoI RAATTY 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 246
BccI CCATC 2 cut(s) 15, 248
BcoDI GTCTC 2 cut(s) 97, 230
BfaI CTAG 2 cut(s) 77, 149
BglII AGATCT 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 97, 230
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 63, 202, 264
BspACI CCGC 2 cut(s) 74, 85
BspPI GGATC 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 63, 202, 264
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 108, 219, 248
BstF5I GGATG 1 cut(s) 7
BstKTI GATC 3 cut(s) 66, 205, 267
BstMAI GTCTC 2 cut(s) 97, 230
BstMBI GATC 3 cut(s) 63, 202, 264
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtsCI GGATG 1 cut(s) 7
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 130
CviQI GTAC 1 cut(s) 4
DpnI GATC 3 cut(s) 65, 204, 266
DpnII GATC 3 cut(s) 63, 202, 264
Eco130I CCWWGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 14, 37, 120, 131
FatI CATG 1 cut(s) 129
FspBI CTAG 2 cut(s) 77, 149
Hin1II CATG 1 cut(s) 133
HinfI GANTC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 3 cut(s) 108, 219, 248
HpyCH4V TGCA 2 cut(s) 16, 48
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 3 cut(s) 63, 202, 264
MaeI CTAG 2 cut(s) 77, 149
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 65, 204, 266
MboI GATC 3 cut(s) 63, 202, 264
MboII GAAGA 1 cut(s) 102
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 138, 188
MslI CAYNNNNRTG 2 cut(s) 98, 249
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 3 cut(s) 63, 202, 264
NlaIII CATG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 249
PaeR7I CTCGAG 1 cut(s) 239
PfeI GAWTC 1 cut(s) 53
PspXI VCTCGAGB 1 cut(s) 239
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 98, 249
Sau3AI GATC 3 cut(s) 63, 202, 264
SduI GDGCHC 1 cut(s) 246
SetI ASST 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 98, 249
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 138, 188
SsiI CCGC 2 cut(s) 74, 85
SspMI CTAG 2 cut(s) 77, 149
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 108, 219, 248
TaqI TCGA 3 cut(s) 98, 123, 240
TasI AATT 2 cut(s) 138, 188
TfiI GAWTC 1 cut(s) 53
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 146, 212
XapI RAATTY 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 239
XspI CTAG 2 cut(s) 77, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.