pycom16g18210

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0028525
Physical Location & Seq
Reverse (-)
14781875 .. 14783882
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGTGCTGTGTGTACATGTTAGTTAGAAAATATTTCAGAAAGATATTTTCCTCTCAGTTTCTTTACGGTTACCCTTTGGTTGATGCAGGAATGAGAGAGCTATGGGCAACTGGGTGGATACACAACCGAATAAGAGTGATCGTTTCAAGTTTCACTGTGAAAGTTCTGCTTCTTCCCTGGAGATGGGGAATGAAATATTTCTGGGACAAGCTGATGGATGCCGATTTAGAAAGTGATATCCTTGGTTGGCAGTCTATCTCAGGAAGCTTACCAGATGGCCATGAGCTTGAGCGTTTGGACAGTCCAGAGGGCTCAAAATTTGATCCAGAGAGTGAATATGTAAGGCATTGGCTGCCTGAGTTAGCACGTTTGCCAACCGAGTGGATCCATCATCCATGGGATGCACCTGATTCTGTGCTTAAATTCTCAGGTGTAGAGTTTGGATTTAACTATCCAAAACCTATCATTGAGCTAGATTTGGCTAGAGAACACTTCACGAGGGCCATATTCAAGATGTGGGATATGGAAGCAGCAGCAAGGGCTGCAAGCGCAAACGGCGCAGATGAAGTTGCAGTTGACAACTCTGCCAGTGAAGATTTGCCTATCCCAAAGGTGATATTAAAGAAAACCTCTCCTTGTCCTACCGACTCTAATGATCAGAAGGTACCGACACGTCAAAATTCCAAGAGTAATCAATTTAATAGGAAGATCGATCGAAATGAGCCGTGGAAGATGAACGCCTCTGATCCCGAACTCATCGCGACTTCACTAAGTTCATCGAGAAAGAGGACGGTTCTGGATATTGCAGTAAACAAGAAACACAAGCTGTTTGACAAATCTTGTGTCTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

285

Amino Acids

32.68

Weight (kDa)

7.05

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_7 PF03441 23 - 168 1.9e-51 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028525)

Species Orthologous Gene IDs
malus_domestica MD16G1217700.v1.1
pyrus_communis pycom16g18210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 664
AccII CGCG 1 cut(s) 761
AclWI GGATC 4 cut(s) 317, 379, 392, 740
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 3 cut(s) 317, 422, 679
AfaI GTAC 2 cut(s) 14, 666
AfiI CCNNNNNNNGG 1 cut(s) 183
AflIII ACRYGT 2 cut(s) 15, 671
AgsI TTSAA 2 cut(s) 147, 511
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 6 cut(s) 100, 211, 267, 286, 472, 826
AluI AGCT 6 cut(s) 100, 211, 267, 286, 472, 826
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 4 cut(s) 317, 379, 392, 740
AoxI GGCC 2 cut(s) 277, 501
ApeKI GCWGC 4 cut(s) 352, 530, 533, 542
ApoI RAATTY 3 cut(s) 317, 422, 679
ArsI GACNNNNNNTTYG 1 cut(s) 828
Asp700I GAANNNNTTC 1 cut(s) 197
Asp718I GGTACC 1 cut(s) 664
AspLEI GCGC 2 cut(s) 551, 560
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 625
BalI TGGCCA 1 cut(s) 279
BamHI GGATCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 314
BauI CACGAG 1 cut(s) 496
BbvI GCAGC 4 cut(s) 339, 529, 542, 545
BccI CCATC 4 cut(s) 177, 208, 269, 396
BceAI ACGGC 2 cut(s) 571, 709
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 111
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 2 cut(s) 473, 483
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 4 cut(s) 353, 531, 534, 543
BlsI GCNGC 4 cut(s) 354, 532, 535, 544
Bme1390I CCNGG 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 2 cut(s) 386, 666
BmrFI CCNGG 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 73, 208, 391
BmuI ACTGGG 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 199
BpuEI CTTGAG 2 cut(s) 308, 832
Bsa29I ATCGAT 1 cut(s) 711
BsaJI CCNNGG 4 cut(s) 176, 241, 395, 725
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 2 cut(s) 115, 588
BseBI CCWGG 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 4 cut(s) 176, 241, 395, 725
BseGI GGATG 3 cut(s) 223, 391, 406
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 4 cut(s) 68, 273, 348, 441
BseNI ACTGG 2 cut(s) 115, 588
BseXI GCAGC 4 cut(s) 339, 529, 542, 545
Bsh1236I CGCG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 715
BshFI GGCC 2 cut(s) 279, 503
BshNI GGYRCC 1 cut(s) 664
BshVI ATCGAT 1 cut(s) 711
BsiEI CGRYCG 1 cut(s) 715
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 2 cut(s) 279, 503
Bsp1286I GDGCHC 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
Bsp19I CCATGG 1 cut(s) 395
Bsp68I TCGCGA 1 cut(s) 761
BspANI GGCC 2 cut(s) 279, 503
BspCNI CTCAG 4 cut(s) 67, 272, 349, 440
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 1 cut(s) 761
BspLI GGNNCC 2 cut(s) 386, 666
BspPI GGATC 4 cut(s) 317, 379, 392, 740
BspT107I GGYRCC 1 cut(s) 664
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 2 cut(s) 115, 588
BssECI CCNNGG 4 cut(s) 176, 241, 395, 725
BssMI GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
BssSI CACGAG 1 cut(s) 496
BssT1I CCWWGG 2 cut(s) 241, 395
Bst2BI CACGAG 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 4 cut(s) 68, 157, 302, 793
BstAPI GCANNNNNTGC 2 cut(s) 352, 542
BstAUI TGTACA 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 5 cut(s) 54, 259, 357, 427, 770
BstDSI CCRYGG 2 cut(s) 395, 725
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 3 cut(s) 223, 391, 406
BstFNI CGCG 1 cut(s) 761
BstHHI GCGC 2 cut(s) 551, 560
BstKTI GATC 7 cut(s) 141, 325, 387, 658, 711, 715, 748
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
BstMCI CGRYCG 1 cut(s) 715
BstMWI GCNNNNNNNGC 6 cut(s) 352, 539, 542, 548, 555, 557
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 176
BstUI CGCG 1 cut(s) 761
BstV1I GCAGC 4 cut(s) 339, 529, 542, 545
BstX2I RGATCY 1 cut(s) 384
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 711
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 279, 503
BsuTUI ATCGAT 1 cut(s) 711
BtgI CCRYGG 2 cut(s) 395, 725
BtgZI GCGATG 1 cut(s) 742
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 3 cut(s) 223, 391, 406
BtsIMutI CAGTG 2 cut(s) 153, 595
BtuMI TCGCGA 1 cut(s) 761
Cac8I GCNNGC 1 cut(s) 547
CfoI GCGC 2 cut(s) 551, 560
Cfr13I GGNCC 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 711
Csp6I GTAC 2 cut(s) 13, 665
CviAII CATG 3 cut(s) 16, 281, 396
CviQI GTAC 2 cut(s) 13, 665
DdeI CTNAG 5 cut(s) 54, 259, 357, 427, 770
DpnI GATC 7 cut(s) 140, 324, 386, 657, 710, 714, 747
DpnII GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 241, 395
Eco24I GRGCYC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 238
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 176
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 241, 395
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 2 cut(s) 241, 395
FaeI CATG 3 cut(s) 19, 284, 399
FaiI YATR 7 cut(s) 17, 103, 282, 339, 397, 506, 524
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 218
FatI CATG 3 cut(s) 15, 280, 395
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 4 cut(s) 353, 531, 534, 543
FokI GGATG 3 cut(s) 230, 378, 413
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 353, 531, 534, 543
FspBI CTAG 2 cut(s) 473, 483
GlaI GCGC 2 cut(s) 550, 559
GluI GCNGC 4 cut(s) 353, 531, 534, 543
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 2 cut(s) 279, 503
HhaI GCGC 2 cut(s) 551, 560
Hin1II CATG 3 cut(s) 19, 284, 399
Hin6I GCGC 2 cut(s) 549, 558
HinP1I GCGC 2 cut(s) 549, 558
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 2 cut(s) 410, 647
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 3 cut(s) 13, 577, 811
Hpy188I TCNGA 3 cut(s) 38, 660, 745
Hpy188III TCNNGA 9 cut(s) 261, 305, 326, 496, 511, 749, 760, 780, 797
Hpy8I GTNNAC 3 cut(s) 13, 577, 811
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 4 cut(s) 68, 157, 302, 793
HpyCH4IV ACGT 2 cut(s) 367, 673
HpyCH4V TGCA 5 cut(s) 86, 404, 545, 572, 806
HpyF10VI GCNNNNNNNGC 6 cut(s) 352, 539, 542, 548, 555, 557
HpyF3I CTNAG 5 cut(s) 54, 259, 357, 427, 770
HpySE526I ACGT 2 cut(s) 367, 673
Hsp92II CATG 3 cut(s) 19, 284, 399
HspAI GCGC 2 cut(s) 549, 558
KpnI GGTACC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
Lsp1109I GCAGC 4 cut(s) 339, 529, 542, 545
LweI GCATC 3 cut(s) 73, 208, 391
MaeI CTAG 2 cut(s) 473, 483
MaeII ACGT 2 cut(s) 367, 673
MaeIII GTNAC 1 cut(s) 68
MalI GATC 7 cut(s) 140, 324, 386, 657, 710, 714, 747
MboI GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
MboII GAAGA 4 cut(s) 164, 605, 718, 742
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 4 cut(s) 317, 422, 679, 695
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 6 cut(s) 61, 301, 492, 640, 751, 780
Mox20I TGGCCA 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 279
MseI TTAA 4 cut(s) 420, 447, 620, 699
Msp20I TGGCCA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 761
MwoI GCNNNNNNNGC 6 cut(s) 352, 539, 542, 548, 555, 557
NcoI CCATGG 1 cut(s) 395
NdeII GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
NlaIII CATG 3 cut(s) 19, 284, 399
NlaIV GGNNCC 2 cut(s) 386, 666
NruI TCGCGA 1 cut(s) 761
NspI RCATGY 1 cut(s) 19
PciI ACATGT 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 4 cut(s) 354, 532, 535, 544
Ple19I CGATCG 1 cut(s) 715
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PscI ACATGT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 176
PspEI GGTNACC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 386, 666
PspPI GGNCC 1 cut(s) 501
PsuI RGATCY 1 cut(s) 384
PvuI CGATCG 1 cut(s) 715
RruI TCGCGA 1 cut(s) 761
RsaI GTAC 2 cut(s) 14, 666
RsaNI GTAC 2 cut(s) 13, 665
SaqAI TTAA 4 cut(s) 420, 447, 620, 699
SatI GCNGC 4 cut(s) 353, 531, 534, 543
Sau3AI GATC 7 cut(s) 138, 322, 384, 655, 708, 712, 745
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 3 cut(s) 73, 208, 391
SmlI CTYRAG 2 cut(s) 287, 847
SmoI CTYRAG 2 cut(s) 287, 847
Sse9I AATT 4 cut(s) 317, 422, 679, 695
SspI AATATT 2 cut(s) 32, 197
SspMI CTAG 2 cut(s) 473, 483
StyD4I CCNGG 1 cut(s) 176
StyI CCWWGG 2 cut(s) 241, 395
TaaI ACNGT 4 cut(s) 68, 157, 302, 793
TaiI ACGT 2 cut(s) 370, 676
TaqI TCGA 3 cut(s) 711, 715, 779
TasI AATT 4 cut(s) 317, 422, 679, 695
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 4 cut(s) 420, 447, 620, 699
Tru9I TTAA 4 cut(s) 420, 447, 620, 699
TscAI CASTG 2 cut(s) 160, 595
TseI GCWGC 4 cut(s) 352, 530, 533, 542
TspDTI ATGAA 4 cut(s) 206, 579, 749, 765
TspRI CASTG 2 cut(s) 160, 595
XapI RAATTY 3 cut(s) 317, 422, 679
XceI RCATGY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 473, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.