pycom16g19540
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
16684327 .. 16685500
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGTTACTGTATTAAAAATTGCTTTGATCTGCACAAGTATGCCCCCTTTTGACCGTCCATCAACTCGAGAAGTTGTGTTGATGCTTTTTGAGTCTAATGAGCAAGATGGGGACTTTCTTCCGTCTCCAACTTTCAATCTTCCTTCGAAAGATGCTACGGATCTTCTGAAAGACGATGTAGATCTTCCTTTGACAGATGATACTCGGTTGTTTATCCAAACTGAAGATGTTTGCCGGTTGCCTTCACAGTGCTATTTATTCAAACTGAAGATGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.57

Weight (kDa)

4.35

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029479)

Species Orthologous Gene IDs
pyrus_communis pycom16g19540
rosa_samantha Rh4AG071600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 136, 262
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 66
AsuII TTCGAA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 66
BccI CCATC 2 cut(s) 67, 101
BcoDI GTCTC 1 cut(s) 129
BglII AGATCT 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 66
BmsI GCATC 2 cut(s) 72, 142
Bpu14I TTCGAA 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 146
Bsp143I GATC 3 cut(s) 27, 160, 181
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 234
BssMI GATC 3 cut(s) 27, 160, 181
Bst4CI ACNGT 3 cut(s) 10, 56, 249
BstBI TTCGAA 1 cut(s) 146
BstKTI GATC 3 cut(s) 30, 163, 184
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 27, 160, 181
BstX2I RGATCY 2 cut(s) 160, 181
BstYI RGATCY 2 cut(s) 160, 181
BtsIMutI CAGTG 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 234
DpnI GATC 3 cut(s) 29, 162, 183
DpnII GATC 3 cut(s) 27, 160, 181
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 129
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 125
HapII CCGG 1 cut(s) 235
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 153, 252
HpyCH4III ACNGT 3 cut(s) 10, 56, 249
HpyCH4V TGCA 1 cut(s) 33
Kzo9I GATC 3 cut(s) 27, 160, 181
LpnPI CCDG 1 cut(s) 248
LweI GCATC 2 cut(s) 72, 142
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 29, 162, 183
MboI GATC 3 cut(s) 27, 160, 181
MboII GAAGA 5 cut(s) 110, 131, 155, 176, 236
MflI RGATCY 2 cut(s) 160, 181
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 152
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 1 cut(s) 235
NdeII GATC 3 cut(s) 27, 160, 181
NspV TTCGAA 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 66
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PsuI RGATCY 2 cut(s) 160, 181
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 3 cut(s) 27, 160, 181
SchI GAGTC 1 cut(s) 101
SfaNI GCATC 2 cut(s) 72, 142
Sfr274I CTCGAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 146
SgeI CNNG 6 cut(s) 48, 78, 80, 116, 216, 247
SlaI CTCGAG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 1 cut(s) 18
TaaI ACNGT 3 cut(s) 10, 56, 249
TaqI TCGA 2 cut(s) 67, 146
TasI AATT 1 cut(s) 18
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 254
TspGWI ACGGA 2 cut(s) 111, 173
TspRI CASTG 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.