Rh4AG071600
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0029479
Physical Location & Seq
Forward (+)
14700359 .. 14700790
432 bp
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UTR
Exon/CDS
Intron
Rh4AG071600.1

Sequence Viewer

Length: 432 bp
ATGGCAGAGTATGCATACACCATGAAGGTCACAGAAAAATGTGACATCTATAGCTATGGGGTAGTGCTATTGGAGCTGCTAACTGGAAGAACTCCTGTACAATCACTAGATCAAGGAGGTGATCTTGTCACCTGGGTTAGACACTACGTCAGAGAACATTCTTTGACATCTGGGATACTCGACAGCCGGTTGAATCTTCAAGACAAAAGTATGGTTGATCACATGCTTACTGTCCTAAAGATTGCTTTGATGTGCACTAGTATGTCCCCGTTCGACCGTCCATCAATTCGAGAAGTTGTGCTGATGCTTATTGAGTCTAATGAGCAAGGAGACTTTGTGCCATCTCCAACTTATGATCTTCCTTTGAAAGACGATTCAGATCTTCCTTTGACAGATGATTCAGATATTCCATTGAAAGATGATACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

143

Amino Acids

16.19

Weight (kDa)

4.48

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 100 8.6e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029479)

Species Orthologous Gene IDs
pyrus_communis pycom16g19540
rosa_samantha Rh4AG071600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 4 cut(s) 193, 200, 367, 415
AhdI GACNNNNNGTC 1 cut(s) 146
AhlI ACTAGT 1 cut(s) 257
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 2 cut(s) 54, 76
AluI AGCT 2 cut(s) 54, 76
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 324
Alw44I GTGCAC 1 cut(s) 253
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 121, 131
BaeGI GKGCMC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 289, 349
BciT130I CCWGG 1 cut(s) 133
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 2 cut(s) 107, 258
BfmI CTRYAG 1 cut(s) 49
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 1 cut(s) 379
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 133
BmeRI GACNNNNNGTC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 378
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 5 cut(s) 109, 121, 217, 355, 379
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 5 cut(s) 109, 121, 217, 355, 379
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 232, 278
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 97
BstKTI GATC 5 cut(s) 112, 124, 220, 358, 382
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 5 cut(s) 109, 121, 217, 355, 379
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 11, 73
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuI GTATCC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 186
Csp6I GTAC 1 cut(s) 98
CviAII CATG 2 cut(s) 22, 223
CviJI RGCY 3 cut(s) 54, 76, 186
CviKI_1 RGCY 3 cut(s) 54, 76, 186
CviQI GTAC 1 cut(s) 98
DpnI GATC 5 cut(s) 111, 123, 219, 357, 381
DpnII GATC 5 cut(s) 109, 121, 217, 355, 379
DriI GACNNNNNGTC 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 2 cut(s) 25, 226
FaiI YATR 9 cut(s) 12, 16, 23, 51, 57, 212, 224, 263, 354
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 21, 222
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 2 cut(s) 107, 258
GluI GCNGC 1 cut(s) 77
HapII CCGG 1 cut(s) 187
Hin1II CATG 2 cut(s) 25, 226
HinfI GANTC 4 cut(s) 193, 314, 374, 398
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 121, 131
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 3 cut(s) 152, 379, 403
Hpy188III TCNNGA 2 cut(s) 200, 290
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 232, 278
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 14, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 73
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 25, 226
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 5 cut(s) 109, 121, 217, 355, 379
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 69, 108, 118, 145, 156, 200
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 294
MaeI CTAG 2 cut(s) 107, 258
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 28, 41, 127
MalI GATC 5 cut(s) 111, 123, 219, 357, 381
MboI GATC 5 cut(s) 109, 121, 217, 355, 379
MboII GAAGA 4 cut(s) 99, 188, 350, 374
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 16
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 11, 73
NdeII GATC 5 cut(s) 109, 121, 217, 355, 379
NlaIII CATG 2 cut(s) 25, 226
NmuCI GTSAC 3 cut(s) 28, 41, 127
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 1 cut(s) 226
PfeI GAWTC 3 cut(s) 193, 374, 398
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 5 cut(s) 109, 121, 217, 355, 379
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 257
SetI ASST 6 cut(s) 30, 56, 78, 121, 134, 150
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 1 cut(s) 285
SspMI CTAG 2 cut(s) 107, 258
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 232, 278
TaiI ACGT 1 cut(s) 150
TaqI TCGA 4 cut(s) 180, 273, 289, 427
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 3 cut(s) 193, 374, 398
TseFI GTSAC 3 cut(s) 28, 41, 127
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 3 cut(s) 28, 41, 127
TspDTI ATGAA 1 cut(s) 38
VneI GTGCAC 1 cut(s) 253
XceI RCATGY 1 cut(s) 226
XspI CTAG 2 cut(s) 107, 258
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.