gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD14G1099000.v1.1 |
| pyrus_communis | pycom16g20790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 182, 430 |
| AfaI | GTAC | 1 cut(s) | 475 |
| AflII | CTTAAG | 1 cut(s) | 122 |
| AgsI | TTSAA | 5 cut(s) | 16, 98, 158, 365, 436 |
| AhlI | ACTAGT | 1 cut(s) | 91 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 4 cut(s) | 119, 201, 245, 426 |
| AluI | AGCT | 4 cut(s) | 119, 201, 245, 426 |
| Alw26I | GTCTC | 2 cut(s) | 214, 283 |
| ApoI | RAATTY | 2 cut(s) | 182, 430 |
| BcoDI | GTCTC | 2 cut(s) | 214, 283 |
| BcuI | ACTAGT | 1 cut(s) | 91 |
| BfaI | CTAG | 3 cut(s) | 92, 234, 246 |
| BfrI | CTTAAG | 1 cut(s) | 122 |
| BlpI | GCTNAGC | 1 cut(s) | 197 |
| BmsI | GCATC | 1 cut(s) | 183 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 197 |
| BpuEI | CTTGAG | 3 cut(s) | 94, 424, 442 |
| Bse1I | ACTGG | 2 cut(s) | 90, 138 |
| BseGI | GGATG | 1 cut(s) | 403 |
| BseNI | ACTGG | 2 cut(s) | 90, 138 |
| BsmAI | GTCTC | 2 cut(s) | 214, 283 |
| BsmBI | CGTCTC | 1 cut(s) | 283 |
| Bsp143I | GATC | 2 cut(s) | 28, 496 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 197 |
| BspHI | TCATGA | 1 cut(s) | 478 |
| BspTI | CTTAAG | 1 cut(s) | 122 |
| BsrI | ACTGG | 2 cut(s) | 90, 138 |
| BssMI | GATC | 2 cut(s) | 28, 496 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 351 |
| BstAFI | CTTAAG | 1 cut(s) | 122 |
| BstDEI | CTNAG | 3 cut(s) | 164, 197, 341 |
| BstF5I | GGATG | 1 cut(s) | 403 |
| BstKTI | GATC | 2 cut(s) | 31, 499 |
| BstMAI | GTCTC | 2 cut(s) | 214, 283 |
| BstMBI | GATC | 2 cut(s) | 28, 496 |
| BtsCI | GGATG | 1 cut(s) | 403 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 478 |
| Csp6I | GTAC | 1 cut(s) | 474 |
| CviAII | CATG | 1 cut(s) | 479 |
| CviJI | RGCY | 5 cut(s) | 119, 201, 245, 419, 426 |
| CviKI_1 | RGCY | 5 cut(s) | 119, 201, 245, 419, 426 |
| CviQI | GTAC | 1 cut(s) | 474 |
| DdeI | CTNAG | 3 cut(s) | 164, 197, 341 |
| DpnI | GATC | 2 cut(s) | 30, 498 |
| DpnII | GATC | 2 cut(s) | 28, 496 |
| Esp3I | CGTCTC | 1 cut(s) | 283 |
| FaeI | CATG | 1 cut(s) | 482 |
| FaiI | YATR | 8 cut(s) | 36, 170, 204, 307, 316, 318, 445, 480 |
| FatI | CATG | 1 cut(s) | 478 |
| FauNDI | CATATG | 1 cut(s) | 316 |
| FokI | GGATG | 1 cut(s) | 410 |
| FspBI | CTAG | 3 cut(s) | 92, 234, 246 |
| Hin1II | CATG | 1 cut(s) | 482 |
| HinfI | GANTC | 1 cut(s) | 238 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 501 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 55, 73, 158, 177, 362, 403, 479 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 351 |
| HpyCH4V | TGCA | 3 cut(s) | 49, 206, 255 |
| HpyF3I | CTNAG | 3 cut(s) | 164, 197, 341 |
| Hsp92II | CATG | 1 cut(s) | 482 |
| Kzo9I | GATC | 2 cut(s) | 28, 496 |
| LpnPI | CCDG | 2 cut(s) | 71, 119 |
| LweI | GCATC | 1 cut(s) | 183 |
| MaeI | CTAG | 3 cut(s) | 92, 234, 246 |
| MaeIII | GTNAC | 2 cut(s) | 326, 503 |
| MalI | GATC | 2 cut(s) | 30, 498 |
| MboI | GATC | 2 cut(s) | 28, 496 |
| MboII | GAAGA | 2 cut(s) | 256, 506 |
| MfeI | CAATTG | 1 cut(s) | 392 |
| MluCI | AATT | 7 cut(s) | 182, 256, 280, 392, 430, 436, 463 |
| MnlI | CCTC | 2 cut(s) | 133, 502 |
| MseI | TTAA | 4 cut(s) | 123, 272, 428, 462 |
| MslI | CAYNNNNRTG | 2 cut(s) | 44, 483 |
| MspCI | CTTAAG | 1 cut(s) | 122 |
| MunI | CAATTG | 1 cut(s) | 392 |
| NdeI | CATATG | 1 cut(s) | 316 |
| NdeII | GATC | 2 cut(s) | 28, 496 |
| NlaIII | CATG | 1 cut(s) | 482 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 478 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| RsaI | GTAC | 1 cut(s) | 475 |
| RsaNI | GTAC | 1 cut(s) | 474 |
| RseI | CAYNNNNRTG | 2 cut(s) | 44, 483 |
| SaqAI | TTAA | 4 cut(s) | 123, 272, 428, 462 |
| Sau3AI | GATC | 2 cut(s) | 28, 496 |
| SetI | ASST | 7 cut(s) | 121, 144, 175, 203, 247, 370, 428 |
| SfaNI | GCATC | 1 cut(s) | 183 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 44, 483 |
| SmlI | CTYRAG | 4 cut(s) | 73, 122, 403, 421 |
| SmoI | CTYRAG | 4 cut(s) | 73, 122, 403, 421 |
| SpeI | ACTAGT | 1 cut(s) | 91 |
| Sse9I | AATT | 7 cut(s) | 182, 256, 280, 392, 430, 436, 463 |
| SspI | AATATT | 1 cut(s) | 23 |
| SspMI | CTAG | 3 cut(s) | 92, 234, 246 |
| TaaI | ACNGT | 2 cut(s) | 46, 351 |
| TaqI | TCGA | 2 cut(s) | 241, 415 |
| TasI | AATT | 7 cut(s) | 182, 256, 280, 392, 430, 436, 463 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| Tru1I | TTAA | 4 cut(s) | 123, 272, 428, 462 |
| Tru9I | TTAA | 4 cut(s) | 123, 272, 428, 462 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TspDTI | ATGAA | 2 cut(s) | 303, 312 |
| TspRI | CASTG | 1 cut(s) | 49 |
| Vha464I | CTTAAG | 1 cut(s) | 122 |
| XapI | RAATTY | 2 cut(s) | 182, 430 |
| XspI | CTAG | 3 cut(s) | 92, 234, 246 |