Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0028261

Physical Location & Seq

Genomic Coordinates Forward (+)

20367064 .. 20367904

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGAGGGCATTCCATCAATTGCAGAACATCGGATACAAACCTGACTTAGTTGTATTCAACTCCATGCTTTCAATTTTTGCTAGAAACAACATGTATGATCGGGCCAATGACATGTTGTACATGATTCGTGAAAATAACCTTCAGCCAGATCTCATAACTTACAACAGCTTGATGGACATGTACGCCAGAAAGGGAGAGTGCTGGAAAGCAGAAGAAATCCTCATGGCCCTACAAAATTCTGGTGGGAAACCAGACCTTGTCTCTTATAACACAGTCATCAAAGGGTTTTGCAGGCAAGGGCACATGCAGGAGGCCATAAGAATTCTCTCGGAGATGACAACTAGAGGAATTCGGCCGTGTATTTTCACCTACAATACTTTCATCACAGGCTATGCAGGGCAGGGAATGTTCTCAGAAATAGATGAAGTGATTAGCTATATGACTCAGAACAATTGCAGGCCGAATGAGCTGAGCTACAAGATTGCGGTGGATGGTTATTGTAAAGCGAGAAAATATAAAGAAGCCATGGACTTTCTGTCCAAGATTAAGGAGATTGATAGTTCGATTGATCGATCAATATGTGCAAAGACTTGCTTCTCGCATTCGGGCACCTGCATATATAGGGTTTCCAGCGAATGTAATTACCTTTGTTACTTTGTTGTTGGGTATTGTTGTGAATTTGTTAATGTAAGGAACGGTGCTTTCGTTGTGACAGCAAGCGTTTGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

245

Amino Acids

28.01

Weight (kDa)

7.89

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	5 - 62	1.5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	15 - 64	7.3e-09	PPR repeat family
PPR_3	PF13812	47 - 97	2.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	50 - 99	4.3e-11	PPR repeat family
TPR_24	PF23276	59 - 120	9.8e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	74 - 132	5.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	82 - 114	1.9e-12	PPR repeat
PPR_2	PF13041	85 - 120	1.9e-11	PPR repeat family
PPR	PF01535	88 - 118	1e-08	PPR repeat
PPR_3	PF13812	108 - 161	6.1e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	120 - 169	9.1e-13	PPR repeat family
PPR_1	PF12854	152 - 182	6.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028261)

Species	Orthologous Gene IDs
malus_domestica	MD13G1249200.v1.1
pyrus_communis	pycom16g21680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AarI	CACCTGC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	623
AccB1I	GGYRCC	1 cut(s)	611
AciI	CCGC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	4 cut(s)	238, 324, 351, 680
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	122, 185
AflIII	ACRYGT	3 cut(s)	93, 114, 180
AgsI	TTSAA	2 cut(s)	61, 75
AhdI	GACNNNNNGTC	1 cut(s)	538
AluBI	AGCT	4 cut(s)	171, 438, 472, 477
AluI	AGCT	4 cut(s)	171, 438, 472, 477
Alw26I	GTCTC	1 cut(s)	268
AoxI	GGCC	5 cut(s)	105, 228, 315, 356, 461
ApoI	RAATTY	4 cut(s)	238, 324, 351, 680
AspS9I	GGNCC	2 cut(s)	105, 229
AsuHPI	GGTGA	1 cut(s)	361
BaeGI	GKGCMC	2 cut(s)	306, 614
BanI	GGYRCC	1 cut(s)	611
BccI	CCATC	3 cut(s)	24, 169, 488
BceAI	ACGGC	1 cut(s)	343
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	2 cut(s)	84, 345
BfuAI	ACCTGC	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	151
BlpI	GCTNAGC	1 cut(s)	473
BmeRI	GACNNNNNGTC	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	105, 229
BmiI	GGNNCC	1 cut(s)	613
Bpu1102I	GCTNAGC	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	1 cut(s)	499
BseMII	CTCAG	3 cut(s)	429, 461, 464
BseSI	GKGCMC	2 cut(s)	306, 614
BseX3I	CGGCCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	5 cut(s)	107, 230, 317, 358, 463
BshNI	GGYRCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	574
BsiEI	CGRYCG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	11, 604
BsnI	GGCC	5 cut(s)	107, 230, 317, 358, 463
Bsp1286I	GDGCHC	2 cut(s)	306, 614
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	100, 151, 571, 575
Bsp1720I	GCTNAGC	1 cut(s)	473
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	5 cut(s)	107, 230, 317, 358, 463
BspCNI	CTCAG	3 cut(s)	428, 460, 465
BspDI	ATCGAT	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	613
BspMI	ACCTGC	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	611
BsrGI	TGTACA	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	4 cut(s)	100, 151, 571, 575
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	277, 701
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	296, 461, 721
BstDEI	CTNAG	4 cut(s)	49, 415, 447, 473
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	4 cut(s)	103, 154, 574, 578
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	4 cut(s)	100, 151, 571, 575
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNSI	RCATGY	4 cut(s)	97, 118, 184, 310
BstSLI	GKGCMC	2 cut(s)	306, 614
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BstZI	CGGCCG	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	5 cut(s)	107, 230, 317, 358, 463
BsuTUI	ATCGAT	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	3 cut(s)	296, 461, 721
Cfr13I	GGNCC	2 cut(s)	105, 229
ClaI	ATCGAT	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	121, 184
CviAII	CATG	8 cut(s)	67, 94, 115, 124, 181, 226, 307, 529
CviQI	GTAC	2 cut(s)	121, 184
DdeI	CTNAG	4 cut(s)	49, 415, 447, 473
DpnI	GATC	4 cut(s)	102, 153, 573, 577
DpnII	GATC	4 cut(s)	100, 151, 571, 575
DriI	GACNNNNNGTC	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	356
EagI	CGGCCG	1 cut(s)	356
Eam1105I	GACNNNNNGTC	1 cut(s)	538
EclXI	CGGCCG	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	528
Eco52I	CGGCCG	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	128
EcoRI	GAATTC	2 cut(s)	324, 351
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	8 cut(s)	70, 97, 118, 127, 184, 229, 310, 532
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	8 cut(s)	66, 93, 114, 123, 180, 225, 306, 528
FokI	GGATG	1 cut(s)	506
FspBI	CTAG	2 cut(s)	84, 345
HaeIII	GGCC	5 cut(s)	107, 230, 317, 358, 463
Hin1II	CATG	8 cut(s)	70, 97, 118, 127, 184, 229, 310, 532
HinfI	GANTC	2 cut(s)	127, 445
HphI	GGTGA	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	35, 334, 418, 450
Hpy188III	TCNNGA	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	277, 701
HpyCH4V	TGCA	7 cut(s)	25, 294, 310, 398, 459, 587, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	4 cut(s)	49, 415, 447, 473
Hsp92II	CATG	8 cut(s)	70, 97, 118, 127, 184, 229, 310, 532
Kzo9I	GATC	4 cut(s)	100, 151, 571, 575
MaeI	CTAG	2 cut(s)	84, 345
MaeIII	GTNAC	2 cut(s)	653, 712
MalI	GATC	4 cut(s)	102, 153, 573, 577
MboI	GATC	4 cut(s)	100, 151, 571, 575
MboII	GAAGA	1 cut(s)	227
MfeI	CAATTG	2 cut(s)	20, 454
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	306, 614
MluCI	AATT	8 cut(s)	20, 75, 238, 324, 351, 454, 643, 680
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	233, 307, 341
MseI	TTAA	2 cut(s)	549, 687
MunI	CAATTG	2 cut(s)	20, 454
Mva1269I	GAATGC	2 cut(s)	11, 604
MwoI	GCNNNNNNNGC	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	4 cut(s)	100, 151, 571, 575
NlaIII	CATG	8 cut(s)	70, 97, 118, 127, 184, 229, 310, 532
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	4 cut(s)	97, 118, 184, 310
PaqCI	CACCTGC	1 cut(s)	623
PciI	ACATGT	3 cut(s)	93, 114, 180
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PctI	GAATGC	2 cut(s)	11, 604
PfeI	GAWTC	1 cut(s)	127
PflFI	GACNNNGTC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	3 cut(s)	93, 114, 180
PsiI	TTATAA	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	2 cut(s)	105, 229
PsrI	GAACNNNNNNTAC	2 cut(s)	20, 52
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	122, 185
RsaNI	GTAC	2 cut(s)	121, 184
SaqAI	TTAA	2 cut(s)	549, 687
Sau3AI	GATC	4 cut(s)	100, 151, 571, 575
Sau96I	GGNCC	2 cut(s)	105, 229
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	306, 614
Sse9I	AATT	8 cut(s)	20, 75, 238, 324, 351, 454, 643, 680
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	2 cut(s)	84, 345
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	277, 701
TaqI	TCGA	2 cut(s)	566, 574
TasI	AATT	8 cut(s)	20, 75, 238, 324, 351, 454, 643, 680
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	549, 687
Tru9I	TTAA	2 cut(s)	549, 687
TseFI	GTSAC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	2 cut(s)	373, 441
Tth111I	GACNNNGTC	1 cut(s)	260
XapI	RAATTY	4 cut(s)	238, 324, 351, 680
XceI	RCATGY	4 cut(s)	97, 118, 184, 310
XspI	CTAG	2 cut(s)	84, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.