pycom17g00100

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0029483
Physical Location & Seq
Reverse (-)
80175 .. 81111
937 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGAGCTTTCAAGATGTGCAGAGTGGCGGAGGAGGAAGGGGAAGGAAGGCATCGGCGTTTCCGTCTCAGGCGGTGGCTGCCGGTATATTCCAGATCAACACTGCCGTCGGCACTTTCCGTCGACTGGTCGATGCCATCGGGACTGCCAAGGACACTCCCGATCACCGCCAGAAGCTGCACAACACGAGGCAACGCATACTTGAACTGGTAAAAGATACGTCTGCCAAGCTCAAATCCCTCACCCAATCTGATCACCAATCCAATGTCAATCCGAGTAAGCAGATAGAAGATGCGAAGCTTGCAAGAGATTTCCAGACCACATTGCAAGAATTTCAGAAAGTTCAACAGCTCGCGTCTGAGCGCGAGTCTACTTACATGCCTTCCTTGCCAACCTCTGCAGCTTCCGCCTCCGCCTCCGCCTCTGGGGAATATTTGGAACCTAGCAGTGGCAGCACCAGGGATCAGCACCGCCAACCTTTCCTTCAGGACCAAAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

167

Amino Acids

18.19

Weight (kDa)

9.69

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 22 - 161 6.3e-32 Syntaxin-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029483)

Species Orthologous Gene IDs
pyrus_communis pycom17g00100
rosa_multiflora Rmu_sc0024970.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 121, 368
AccII CGCG 2 cut(s) 353, 363
AciI CCGC 7 cut(s) 27, 71, 166, 405, 411, 417, 469
AclWI GGATC 1 cut(s) 468
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 467
AfiI CCNNNNNNNGG 3 cut(s) 124, 423, 446
AgsI TTSAA 3 cut(s) 11, 203, 344
AjnI CCWGG 1 cut(s) 455
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 6 cut(s) 6, 175, 229, 298, 349, 401
AluI AGCT 6 cut(s) 6, 175, 229, 298, 349, 401
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 468
AlwNI CAGNNNCTG 1 cut(s) 175
ApeKI GCWGC 4 cut(s) 77, 175, 398, 450
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 155, 232, 245
AvaII GGWCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 184
BbvI GCAGC 4 cut(s) 64, 162, 410, 462
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 457
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 4 cut(s) 78, 176, 399, 451
BlsI GCNGC 4 cut(s) 79, 177, 400, 452
Bme1390I CCNGG 1 cut(s) 457
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 59, 121, 280
BsaJI CCNNGG 2 cut(s) 147, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 423, 446
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 129, 210
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 457
BseDI CCNNGG 2 cut(s) 147, 456
BseLI CCNNNNNNNGG 3 cut(s) 124, 423, 446
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 80, 348
BseNI ACTGG 2 cut(s) 129, 210
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 64, 162, 410, 462
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 2 cut(s) 353, 363
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 124, 423, 446
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 93, 160, 250, 460
BspACI CCGC 7 cut(s) 27, 71, 166, 405, 411, 417, 469
BspCNI CTCAG 2 cut(s) 79, 349
BspFNI CGCG 2 cut(s) 353, 363
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 129, 210
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 147, 456
BssMI GATC 4 cut(s) 93, 160, 250, 460
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 300, 351
BstDEI CTNAG 2 cut(s) 66, 357
BstFNI CGCG 2 cut(s) 353, 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 96, 163, 253, 463
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 4 cut(s) 93, 160, 250, 460
BstMWI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 450
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 455
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 2 cut(s) 353, 363
BstV1I GCAGC 4 cut(s) 64, 162, 410, 462
BtsI GCAGTG 2 cut(s) 99, 451
BtsIMutI CAGTG 2 cut(s) 99, 451
Cac8I GCNNGC 2 cut(s) 300, 351
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 1 cut(s) 342
CviAII CATG 1 cut(s) 376
CviJI RGCY 7 cut(s) 6, 77, 175, 229, 298, 349, 401
CviKI_1 RGCY 7 cut(s) 6, 77, 175, 229, 298, 349, 401
DdeI CTNAG 2 cut(s) 66, 357
DpnI GATC 4 cut(s) 95, 162, 252, 462
DpnII GATC 4 cut(s) 93, 160, 250, 460
EciI GGCGGA 4 cut(s) 42, 394, 400, 406
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 1 cut(s) 379
FaiI YATR 3 cut(s) 86, 197, 377
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 2 cut(s) 121, 368
Fnu4HI GCNGC 4 cut(s) 78, 176, 399, 451
Fsp4HI GCNGC 4 cut(s) 78, 176, 399, 451
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 362
GluI GCNGC 4 cut(s) 78, 176, 399, 451
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 342
HhaI GCGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 81
HphI GGTGA 3 cut(s) 155, 232, 245
Hpy166II GTNNAC 2 cut(s) 122, 369
Hpy188I TCNGA 4 cut(s) 250, 273, 336, 358
Hpy188III TCNNGA 6 cut(s) 11, 91, 139, 158, 313, 485
Hpy8I GTNNAC 2 cut(s) 122, 369
Hpy99I CGWCG 2 cut(s) 110, 123
HpyAV CCTTC 5 cut(s) 30, 36, 40, 390, 491
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 5 cut(s) 19, 178, 302, 325, 398
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 450
HpyF3I CTNAG 2 cut(s) 66, 357
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 4 cut(s) 93, 160, 250, 460
Lsp1109I GCAGC 4 cut(s) 64, 162, 410, 462
LweI GCATC 3 cut(s) 59, 121, 280
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 218
MalI GATC 4 cut(s) 95, 162, 252, 462
MboI GATC 4 cut(s) 93, 160, 250, 460
MboII GAAGA 1 cut(s) 299
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 9 cut(s) 23, 26, 180, 248, 403, 418, 424, 430, 489
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 457
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 2 cut(s) 353, 363
MwoI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 450
NdeII GATC 4 cut(s) 93, 160, 250, 460
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 438
NspI RCATGY 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PkrI GCNGC 4 cut(s) 79, 177, 400, 452
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 487
PstI CTGCAG 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 175
SalI GTCGAC 1 cut(s) 120
SatI GCNGC 4 cut(s) 78, 176, 399, 451
Sau3AI GATC 4 cut(s) 93, 160, 250, 460
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 457
SfaNI GCATC 3 cut(s) 59, 121, 280
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 487
Sse9I AATT 1 cut(s) 329
SsiI CCGC 7 cut(s) 27, 71, 166, 405, 411, 417, 469
SspI AATATT 1 cut(s) 431
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 455
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 121, 129
TasI AATT 1 cut(s) 329
TscAI CASTG 2 cut(s) 106, 451
TseI GCWGC 4 cut(s) 77, 175, 398, 450
TspGWI ACGGA 2 cut(s) 51, 107
TspRI CASTG 2 cut(s) 106, 451
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 121, 368
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.