Rmu_sc0024970.1_g000001

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024970.1
OG0029483
Physical Location & Seq
Forward (+)
192 .. 995
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024970.1_g000001.1.cds

Sequence Viewer

Length: 504 bp
atgagctttcaagatgtgcagaatggcggaggaggaaagggaaagaatgcatcggcatctccgtcgcaggcggtggctgccggcatattccagatcaacactgccgttgccactttccgtcgactggttgatgccatcggaactgtcaaggacactcccgatcaccgccaaaagctgcacaatacgaggcaacggatactggggcttgtcaaagacacttctgctaaactcaaatccctaagcgaatctgatcgccacagcaatgtcaatccccgtaagcagattgaagatgccaagcttgcaagagattttcaaaccacattgcaagaattccagaaagttcaacagcttgcctctgagcgcgagtctacttacatgccttccttaccagcgtcagcatcagcaacagcaacctctgctgcctctgcctctgcctctggggaatatttggaaccaaccagggatgagtaccgtcaacctttcattcaggagcaaaagaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

167

Amino Acids

18.27

Weight (kDa)

9.6

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029483)

Species Orthologous Gene IDs
pyrus_communis pycom17g00100
rosa_multiflora Rmu_sc0024970.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 121, 368
AccII CGCG 1 cut(s) 363
AciI CCGC 3 cut(s) 27, 71, 166
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 4 cut(s) 11, 287, 314, 344
AjnI CCWGG 1 cut(s) 458
AluBI AGCT 4 cut(s) 6, 175, 298, 349
AluI AGCT 4 cut(s) 6, 175, 298, 349
ApeKI GCWGC 3 cut(s) 77, 175, 419
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 155
BbvI GCAGC 3 cut(s) 64, 162, 406
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 460
BciVI GTATCC 1 cut(s) 189
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 3 cut(s) 78, 176, 420
BlsI GCNGC 3 cut(s) 79, 177, 421
Bme1390I CCNGG 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 460
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 5 cut(s) 59, 65, 121, 280, 407
BmuI ACTGGG 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 129, 204
Bse3DI GCAATG 2 cut(s) 268, 320
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 2 cut(s) 268, 320
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 129, 204
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 64, 162, 406
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 124
BsmI GAATGC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 93, 160, 250
BspACI CCGC 3 cut(s) 27, 71, 166
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 453
BsrDI GCAATG 2 cut(s) 268, 320
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 129, 204
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 3 cut(s) 93, 160, 250
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 2 cut(s) 145, 473
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 4 cut(s) 69, 82, 300, 351
BstDEI CTNAG 2 cut(s) 239, 357
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 3 cut(s) 96, 163, 253
BstMBI GATC 3 cut(s) 93, 160, 250
BstMWI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 458
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 64, 162, 406
BsuI GTATCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 69, 82, 300, 351
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 80
CseI GACGC 1 cut(s) 381
Csp6I GTAC 1 cut(s) 469
CviAII CATG 1 cut(s) 376
CviJI RGCY 6 cut(s) 6, 77, 175, 205, 298, 349
CviKI_1 RGCY 6 cut(s) 6, 77, 175, 205, 298, 349
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 2 cut(s) 239, 357
DpnI GATC 3 cut(s) 95, 162, 252
DpnII GATC 3 cut(s) 93, 160, 250
EciI GGCGGA 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 52
FaeI CATG 1 cut(s) 379
FaiI YATR 2 cut(s) 86, 377
FatI CATG 1 cut(s) 375
FblI GTMKAC 2 cut(s) 121, 368
Fnu4HI GCNGC 3 cut(s) 78, 176, 420
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 3 cut(s) 78, 176, 420
GlaI GCGC 1 cut(s) 362
GluI GCNGC 3 cut(s) 78, 176, 420
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 122, 476
HindII GTYRAC 2 cut(s) 122, 476
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 245, 365
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 122, 369, 476
Hpy188I TCNGA 3 cut(s) 140, 250, 358
Hpy188III TCNNGA 5 cut(s) 11, 91, 158, 334, 488
Hpy8I GTNNAC 3 cut(s) 122, 369, 476
Hpy99I CGWCG 2 cut(s) 67, 123
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 2 cut(s) 145, 473
HpyCH4V TGCA 5 cut(s) 19, 50, 178, 302, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
HpyF3I CTNAG 2 cut(s) 239, 357
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 1 cut(s) 361
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 93, 160, 250
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 3 cut(s) 64, 162, 406
LweI GCATC 5 cut(s) 59, 65, 121, 280, 407
MalI GATC 3 cut(s) 95, 162, 252
MboI GATC 3 cut(s) 93, 160, 250
MboII GAAGA 1 cut(s) 299
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 9 cut(s) 23, 26, 180, 364, 424, 433, 439, 445, 492
Mph1103I ATGCAT 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 460
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 3 cut(s) 93, 160, 250
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 453
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 3 cut(s) 79, 177, 421
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 453
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 120
SatI GCNGC 3 cut(s) 78, 176, 420
Sau3AI GATC 3 cut(s) 93, 160, 250
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 460
SetI ASST 7 cut(s) 8, 177, 300, 351, 416, 481, 503
SfaNI GCATC 5 cut(s) 59, 65, 121, 280, 407
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 1 cut(s) 329
SsiI CCGC 3 cut(s) 27, 71, 166
SspI AATATT 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 145, 473
TaqI TCGA 1 cut(s) 121
TasI AATT 1 cut(s) 329
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 1 cut(s) 106
TseI GCWGC 3 cut(s) 77, 175, 419
TspDTI ATGAA 1 cut(s) 472
TspGWI ACGGA 3 cut(s) 51, 107, 208
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 121, 368
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.