Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0022420

Physical Location & Seq

Genomic Coordinates Forward (+)

459862 .. 462710

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGGGTTCCATCGCCATGGAACCCGAGGACATAGCAACCTACGCTTCCCTTCATTCAATTCCTCTCGACAATTCCACCCGCCTTTGCGCGTCGGTGAACATGATACATTCAAATGGCTTCTTCTTTCACAACAATCCTCTGCAGTATTCACTCCCCCTTCTCCTCATGCAATTCTCTCTCGCTACCGGCGTCATTGTCCTCGCCTCCTTGCTCCTCAAGCCTCTCGGCCAGCCTGTCATCGTCGCGCAAGTCTTAGGGGGTATAATACTAGGTCCTTCGATTCTAGGCCGGAGTGATGCATTTATCGATAGTTTTTTTCCTCTCAGAAGTTTCATACTGCTGGATCTTGTTTCCTCTTTTGGATACATGTTCTGCTTCTTCCTCATTGGAGTACAAACGGATCCCTTCATGGTCAAGAAGATTGACAGAAAGACATTTGCCATTGGCGTTGCGACGTTGATTGTCCCAGTTCTCTTGACTCAAGGATGGTGGTATCTCTTGAACCGCTATGTGAATTTGGATATAGAGGTGGTCAGTTCGCTTCCGGCTATGGCTCTAGCAGAGAGTGTGCTGGCCTACCCAACCATTGTTTTCTTTTTGGGTGAGCTCAAGATCGTAAACTCTGATTTTGGGAGGGTGGCAATGTCTTCTTCCATGGTGAGCGGGTTGTGCAGTTTCTCTGTGATAACTGTCGCTGTTCTGGCTGAAGCCGCTAAACCAATGCCGGGTGATGATACCTACGACATGCTAAAACTAATGTTCACCGGTGGTGTTGTTGCGCTTGTCATCGTTTTCCTCATTTGGCCAGCACTCAAATGGTTGATAAGGAGCGACTCAGTGGGACAGCCAATGAAGGAACTCCACATTGTTCAACTGCTTGTCGGAGTCTTGGTGACTGGCCTTTTCAGTCATACCACAGGTTTACACACTTACTATGGGCCTTTTGTTCTTGGCTTGACTATACCGGCAGGGCCGCCAGTTGGGTCTGCTCTTGTGGAGAAGCTTGACCTCATCACCTCTTGGATCTTCATGCCCATCTTCTACATCAAGAATGGCTTGGTTATGGATATCTTCGCCATTCGACTCAAGAATTATACCATCTTCCAATCCACTACCCTCGTGGCTGCACTCGGAAAGTTTTTGGGAGCTTTTCTCAGTTCACTCCTGTGCACCAAAATGCCAGCCACGGATGCTATCTCGCTTGGCCTTGTCATGACTGCGCAAGGCTTTCTCGAACTTGGCTTGTTCAAAATGCTCAAGAGGAATAAGGCGGTCTATCACGAAGCATTTGTTGTGATGTGTGTATCCATTTTACTTATAACAGGGGGTATCACGCCCATTATAAAACGCCTCTACGATCCTTCGAAGAGGTATATAGTTTACAAGACAAGAACAGTGATGAACGCGCGACCAAACTCCCAGCTCCCCATACTTGTCTGCGTACACGACCAAGATGATGTTGAAAACACAACCAAGCTCCTTGAGGCCTTAAATCCAACCGAAAAAAGCCCTCTTGCCATCTATCTACTCCACCTCATAGAGCTTGTTGGCCGTGCAAACCCTCTTCTCATCCCCCATAAGCTCACAAGAAGGACCTCCTCAAAGGCCAGCCCCTCGGAACAAATTGTCAATGCCTTTAGAAAGTACGAGCAAAGGAATCGGAGCCTTGTCACGGTCCACCCCTTTACCGCAATATCTCACTGTGCCACAATGCACGATGATATATGTACAATTGCGCTTGATAAAAAGACTTCCCTCATAATAGCTCCATTTTACCCGATGCTCCATGCCAGAAAACAGAGGTTGATCAACAAAAATGTTCTGGAAAAAGCACCTTGCTCCGTTGCAATCCTTGTTCACCGTGGTGAGCTCTTCAGCAGCAGTTTCAAGAGAAGTTCAAGGGCATTGAAGTTGACAAGCGAGAGCGAGTCTTGTTATAATGTTGCTATTCTCTTCTTTGGAGGACCTGATGACCGAGAGGCAATGGCATTAGGGTCACGAATGGTTGCCCATCCAAACATCAACTTGACACTGATCCGGATTCTTGTAGATGGAAGTATAATAAATACTAATGAGGACGTGGAGCAGAACAGGCTTGACGATGAGGTGTTGAGTGAGTTCAGGGAAGGCATGACAGACAACTATCGGGTCATGTACATAGAAGAGCTGGTGATGGACGGTTCAGGGACTATGGCTGTGCTTCGTTCCATGCAAAGTAACTACGAACTGGTAATAGCGGGAAGAAATCAAGACAAAGGGTCACCATCCCTGTCAGGTCTTGTGGACTTGGAGGATCCTAGTGAGTTGGGAGCTATTGGTGAGGTGCTAGCCACCTCAGATTTCATGGGGGAAACCGGAGTTTTGGTGGTGCAACAACACACCAAAGCGGTGAATGACGAATGTGAGAGTCATACAGGAAACTTGAGGGAGACGAACTTGATAATGGATGATGAGGAATTGCCAATTCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

825

Amino Acids

90.85

Weight (kDa)

6.08

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	65 - 448	6.4e-31	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	505 - 622	1.8e-10	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	647 - 794	7.6e-11	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022420)

Species	Orthologous Gene IDs
malus_domestica	MD17G1002700.v1.1
prunus_persica	Prupe.3G309000_v2.0.a1 Prupe.3G309000_v2.0.a1
pyrus_communis	pycom17g00670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1319, 1343, 1938
Acc16I	TGCGCA	1 cut(s)	1221
AccBSI	CCGCTC	1 cut(s)	663
AccII	CGCG	4 cut(s)	89, 245, 1406, 1408
AccIII	TCCGGA	1 cut(s)	2037
AciI	CCGC	9 cut(s)	79, 505, 663, 711, 974, 1271, 1689, 2237, 2387
AclWI	GGATC	8 cut(s)	351, 395, 408, 1031, 1352, 2029, 2288, 2301
AcoI	YGGCCR	3 cut(s)	226, 803, 1549
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	726, 1858
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	5 cut(s)	393, 1443, 1646, 1729, 2156
AfiI	CCNNNNNNNGG	3 cut(s)	725, 980, 1672
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	764
AhdI	GACNNNNNGTC	1 cut(s)	2257
AjiI	CACGTC	1 cut(s)	2080
AleI	CACNNNNGTG	2 cut(s)	1165, 1863
Alw21I	GWGCWC	3 cut(s)	609, 1172, 1872
Alw26I	GTCTC	1 cut(s)	2423
Alw44I	GTGCAC	1 cut(s)	1168
AlwI	GGATC	8 cut(s)	351, 395, 408, 1031, 1352, 2029, 2288, 2301
Ama87I	CYCGRG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	2037
ApaLI	GTGCAC	1 cut(s)	1168
ApeKI	GCWGC	2 cut(s)	1124, 1878
ApoI	RAATTY	1 cut(s)	514
AsiGI	ACCGGT	1 cut(s)	764
AspLEI	GCGC	6 cut(s)	89, 247, 781, 1222, 1408, 1738
AspS9I	GGNCC	6 cut(s)	272, 938, 971, 1593, 1675, 1964
AsuC2I	CCSGG	1 cut(s)	726
AsuII	TTCGAA	1 cut(s)	1364
AsuNHI	GCTAGC	1 cut(s)	2326
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	4 cut(s)	272, 1593, 1675, 1964
BaeGI	GKGCMC	1 cut(s)	1172
BalI	TGGCCA	1 cut(s)	805
BamHI	GGATCC	2 cut(s)	400, 2293
BanII	GRGCYC	2 cut(s)	609, 1872
BauI	CACGAG	1 cut(s)	1118
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	3 cut(s)	609, 1172, 1872
BbvI	GCAGC	2 cut(s)	1111, 1890
BccI	CCATC	9 cut(s)	17, 480, 1043, 1106, 1526, 2019, 2045, 2167, 2272
BceAI	ACGGC	1 cut(s)	1536
BcgI	CGANNNNNNTGC	2 cut(s)	1640, 1674
BciVI	GTATCC	2 cut(s)	356, 1315
BclI	TGATCA	1 cut(s)	1806
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	2423
BfaI	CTAG	5 cut(s)	269, 284, 557, 2298, 2327
BfmI	CTRYAG	1 cut(s)	140
BfuI	GTATCC	2 cut(s)	356, 1315
BisI	GCNGC	4 cut(s)	711, 974, 1125, 1879
BlsI	GCNGC	4 cut(s)	712, 975, 1126, 1880
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	4 cut(s)	272, 1593, 1675, 1964
BmeRI	GACNNNNNGTC	1 cut(s)	2257
BmeT110I	CYCGRG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	2080
BmgT120I	GGNCC	6 cut(s)	272, 938, 971, 1593, 1675, 1964
BmiI	GGNNCC	5 cut(s)	7, 21, 402, 1664, 2295
BmrFI	CCNGG	1 cut(s)	726
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	286, 1180, 1770
BmtI	GCTAGC	1 cut(s)	2330
BmuI	ACTGGG	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	1137, 1169
Bpu14I	TTCGAA	1 cut(s)	1364
BpuEI	CTTGAG	7 cut(s)	200, 465, 593, 1070, 1241, 1502, 2443
BpuMI	CCSGG	1 cut(s)	726
Bsa29I	ATCGAT	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	6 cut(s)	15, 24, 654, 1185, 1614, 1861
BsaWI	WCCGGW	3 cut(s)	764, 2037, 2354
BsaXI	ACNNNNNCTCC	4 cut(s)	876, 906, 2349, 2379
Bsc4I	CCNNNNNNNGG	3 cut(s)	725, 980, 1672
Bse118I	RCCGGY	3 cut(s)	185, 764, 964
Bse1I	ACTGG	4 cut(s)	467, 901, 977, 2232
Bse3DI	GCAATG	2 cut(s)	648, 1989
BseAI	TCCGGA	1 cut(s)	2037
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	6 cut(s)	15, 24, 654, 1185, 1614, 1861
BseGI	GGATG	6 cut(s)	491, 1195, 1569, 2011, 2264, 2452
BseLI	CCNNNNNNNGG	3 cut(s)	725, 980, 1672
BseMI	GCAATG	2 cut(s)	648, 1989
BseMII	CTCAG	4 cut(s)	337, 849, 1168, 2349
BseNI	ACTGG	4 cut(s)	467, 901, 977, 2232
BseRI	GAGGAG	3 cut(s)	152, 203, 1588
BseSI	GKGCMC	1 cut(s)	1172
BseXI	GCAGC	2 cut(s)	1111, 1890
BseYI	CCCAGC	1 cut(s)	1419
BsgI	GTGCAG	2 cut(s)	691, 1110
Bsh1236I	CGCG	4 cut(s)	89, 245, 1406, 1408
BshTI	ACCGGT	1 cut(s)	764
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	3 cut(s)	609, 1172, 1872
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	8 cut(s)	186, 289, 545, 725, 765, 965, 2038, 2355
BslFI	GGGAC	3 cut(s)	449, 855, 2200
BslI	CCNNNNNNNGG	3 cut(s)	725, 980, 1672
BsmAI	GTCTC	1 cut(s)	2423
BsmBI	CGTCTC	1 cut(s)	2423
BsmFI	GGGAC	3 cut(s)	449, 855, 2200
BsoBI	CYCGRG	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	1364
Bsp1286I	GDGCHC	3 cut(s)	609, 1172, 1872
Bsp13I	TCCGGA	1 cut(s)	2037
Bsp1407I	TGTACA	2 cut(s)	1727, 2154
Bsp143I	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
Bsp19I	CCATGG	2 cut(s)	15, 654
BspACI	CCGC	9 cut(s)	79, 505, 663, 711, 974, 1271, 1689, 2237, 2387
BspCNI	CTCAG	4 cut(s)	336, 848, 1167, 2348
BspDI	ATCGAT	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	2037
BspFNI	CGCG	4 cut(s)	89, 245, 1406, 1408
BspHI	TCATGA	1 cut(s)	1212
BspLI	GGNNCC	5 cut(s)	7, 21, 402, 1664, 2295
BspMAI	CTGCAG	1 cut(s)	144
BspOI	GCTAGC	1 cut(s)	2330
BspPI	GGATC	8 cut(s)	351, 395, 408, 1031, 1352, 2029, 2288, 2301
BspQI	GCTCTTC	2 cut(s)	1877, 2157
BspT104I	TTCGAA	1 cut(s)	1364
BsrBI	CCGCTC	1 cut(s)	663
BsrDI	GCAATG	2 cut(s)	648, 1989
BsrFI	RCCGGY	3 cut(s)	185, 764, 964
BsrGI	TGTACA	2 cut(s)	1727, 2154
BsrI	ACTGG	4 cut(s)	467, 901, 977, 2232
BssAI	RCCGGY	3 cut(s)	185, 764, 964
BssECI	CCNNGG	6 cut(s)	15, 24, 654, 1185, 1614, 1861
BssMI	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	1118
BssT1I	CCWWGG	2 cut(s)	15, 654
Bst2BI	CACGAG	1 cut(s)	1118
Bst4CI	ACNGT	6 cut(s)	691, 1396, 1675, 1703, 1862, 2180
Bst6I	CTCTTC	5 cut(s)	1361, 1569, 1877, 1958, 2157
BstACI	GRCGYC	1 cut(s)	189
BstAUI	TGTACA	2 cut(s)	1727, 2154
BstBI	TTCGAA	1 cut(s)	1364
BstC8I	GCNNGC	6 cut(s)	230, 573, 807, 1182, 1609, 2328
BstDEI	CTNAG	5 cut(s)	253, 323, 835, 1154, 2335
BstDSI	CCRYGG	4 cut(s)	15, 654, 1185, 1861
BstEII	GGTNACC	1 cut(s)	2259
BstF5I	GGATG	6 cut(s)	491, 1195, 1569, 2011, 2264, 2452
BstFNI	CGCG	4 cut(s)	89, 245, 1406, 1408
BstHHI	GCGC	6 cut(s)	89, 247, 781, 1222, 1408, 1738
BstKTI	GATC	8 cut(s)	346, 403, 615, 1026, 1360, 1809, 2037, 2296
BstMAI	GTCTC	1 cut(s)	2423
BstMBI	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 217, 669, 701, 710, 1190, 2092
BstNSI	RCATGY	2 cut(s)	370, 748
BstPI	GGTNACC	1 cut(s)	2259
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	1172
BstUI	CGCG	4 cut(s)	89, 245, 1406, 1408
BstV1I	GCAGC	2 cut(s)	1111, 1890
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	4 cut(s)	343, 400, 1023, 2293
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	4 cut(s)	343, 400, 1023, 2293
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	2 cut(s)	356, 1315
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	4 cut(s)	15, 654, 1185, 1861
BtrI	CACGTC	1 cut(s)	2080
BtsCI	GGATG	6 cut(s)	491, 1195, 1569, 2011, 2264, 2452
BtsIMutI	CAGTG	4 cut(s)	843, 1401, 1699, 2030
Cac8I	GCNNGC	6 cut(s)	230, 573, 807, 1182, 1609, 2328
CciI	TCATGA	1 cut(s)	1212
CfoI	GCGC	6 cut(s)	89, 247, 781, 1222, 1408, 1738
Cfr10I	RCCGGY	3 cut(s)	185, 764, 964
Cfr13I	GGNCC	6 cut(s)	272, 938, 971, 1593, 1675, 1964
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	2 cut(s)	78, 178
Csp6I	GTAC	5 cut(s)	392, 1442, 1645, 1728, 2155
CspAI	ACCGGT	1 cut(s)	764
CspCI	CAANNNNNGTGG	2 cut(s)	470, 505
CviQI	GTAC	5 cut(s)	392, 1442, 1645, 1728, 2155
DdeI	CTNAG	5 cut(s)	253, 323, 835, 1154, 2335
DpnI	GATC	8 cut(s)	345, 402, 614, 1025, 1359, 1808, 2036, 2295
DpnII	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
DriI	GACNNNNNGTC	1 cut(s)	2257
EaeI	YGGCCR	3 cut(s)	226, 803, 1549
Eam1104I	CTCTTC	5 cut(s)	1361, 1569, 1877, 1958, 2157
Eam1105I	GACNNNNNGTC	1 cut(s)	2257
EarI	CTCTTC	5 cut(s)	1361, 1569, 1877, 1958, 2157
Ecl136II	GAGCTC	2 cut(s)	607, 1870
Eco130I	CCWWGG	2 cut(s)	15, 654
Eco147I	AGGCCT	1 cut(s)	1487
Eco24I	GRGCYC	2 cut(s)	609, 1872
Eco32I	GATATC	1 cut(s)	1069
Eco47I	GGWCC	4 cut(s)	272, 1593, 1675, 1964
Eco53kI	GAGCTC	2 cut(s)	607, 1870
Eco57I	CTGAAG	2 cut(s)	726, 1858
Eco88I	CYCGRG	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	2259
EcoICRI	GAGCTC	2 cut(s)	607, 1870
EcoO109I	RGGNCCY	3 cut(s)	272, 1593, 1964
EcoO65I	GGTNACC	1 cut(s)	2259
EcoRV	GATATC	1 cut(s)	1069
EcoT14I	CCWWGG	2 cut(s)	15, 654
EcoT22I	ATGCAT	1 cut(s)	301
EcoT38I	GRGCYC	2 cut(s)	609, 1872
ErhI	CCWWGG	2 cut(s)	15, 654
Esp3I	CGTCTC	1 cut(s)	2423
FalI	AAGNNNNNCTT	2 cut(s)	1040, 1072
FaqI	GGGAC	3 cut(s)	449, 855, 2200
FauI	CCCGC	3 cut(s)	86, 656, 2230
FbaI	TGATCA	1 cut(s)	1806
Fnu4HI	GCNGC	4 cut(s)	711, 974, 1125, 1879
FokI	GGATG	6 cut(s)	498, 1202, 1556, 1998, 2251, 2459
FriOI	GRGCYC	2 cut(s)	609, 1872
Fsp4HI	GCNGC	4 cut(s)	711, 974, 1125, 1879
FspBI	CTAG	5 cut(s)	269, 284, 557, 2298, 2327
FspI	TGCGCA	1 cut(s)	1221
GlaI	GCGC	6 cut(s)	88, 246, 780, 1221, 1407, 1737
GluI	GCNGC	4 cut(s)	711, 974, 1125, 1879
GsaI	CCCAGC	1 cut(s)	1423
HapII	CCGG	8 cut(s)	186, 289, 545, 725, 765, 965, 2038, 2355
HgaI	GACGC	2 cut(s)	78, 178
HhaI	GCGC	6 cut(s)	89, 247, 781, 1222, 1408, 1738
Hin1I	GRCGYC	1 cut(s)	189
Hin6I	GCGC	6 cut(s)	87, 245, 779, 1220, 1406, 1736
HinP1I	GCGC	6 cut(s)	87, 245, 779, 1220, 1406, 1736
HincII	GTYRAC	1 cut(s)	1914
HindII	GTYRAC	1 cut(s)	1914
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	9 cut(s)	280, 478, 833, 885, 1083, 1657, 1928, 2041, 2407
HpaII	CCGG	8 cut(s)	186, 289, 545, 725, 765, 965, 2038, 2355
Hpy188I	TCNGA	7 cut(s)	326, 625, 884, 1133, 1618, 1662, 2338
Hpy99I	CGWCG	3 cut(s)	94, 245, 457
HpyAV	CCTTC	8 cut(s)	59, 167, 285, 415, 847, 1371, 1584, 2120
HpyCH4III	ACNGT	6 cut(s)	691, 1396, 1675, 1703, 1862, 2180
HpyCH4IV	ACGT	2 cut(s)	455, 2079
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 217, 669, 701, 710, 1190, 2092
HpyF3I	CTNAG	5 cut(s)	253, 323, 835, 1154, 2335
HpySE526I	ACGT	2 cut(s)	455, 2079
Hsp92I	GRCGYC	1 cut(s)	189
HspAI	GCGC	6 cut(s)	87, 245, 779, 1220, 1406, 1736
Kpn2I	TCCGGA	1 cut(s)	2037
Ksp22I	TGATCA	1 cut(s)	1806
Kzo9I	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
LguI	GCTCTTC	2 cut(s)	1877, 2157
Lsp1109I	GCAGC	2 cut(s)	1111, 1890
LweI	GCATC	3 cut(s)	286, 1180, 1770
MaeI	CTAG	5 cut(s)	269, 284, 557, 2298, 2327
MaeII	ACGT	2 cut(s)	455, 2079
MaeIII	GTNAC	5 cut(s)	892, 1669, 1995, 2216, 2259
MalI	GATC	8 cut(s)	345, 402, 614, 1025, 1359, 1808, 2036, 2295
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
MfeI	CAATTG	1 cut(s)	1731
MflI	RGATCY	4 cut(s)	343, 400, 1023, 2293
MhlI	GDGCHC	3 cut(s)	609, 1172, 1872
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	9 cut(s)	57, 70, 170, 514, 1090, 1623, 1731, 2456, 2463
MluNI	TGGCCA	1 cut(s)	805
MlyI	GAGTC	6 cut(s)	472, 827, 894, 1077, 1937, 2416
MmeI	TCCRAC	2 cut(s)	862, 1520
Mox20I	TGGCCA	1 cut(s)	805
Mph1103I	ATGCAT	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	2037
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	1 cut(s)	1490
MslI	CAYNNNNRTG	6 cut(s)	14, 111, 814, 1165, 1175, 1863
Msp20I	TGGCCA	1 cut(s)	805
MspI	CCGG	8 cut(s)	186, 289, 545, 725, 765, 965, 2038, 2355
MspR9I	CCNGG	1 cut(s)	726
MunI	CAATTG	1 cut(s)	1731
MvnI	CGCG	4 cut(s)	89, 245, 1406, 1408
MwoI	GCNNNNNNNGC	7 cut(s)	41, 217, 669, 701, 710, 1190, 2092
NciI	CCSGG	1 cut(s)	726
NcoI	CCATGG	2 cut(s)	15, 654
NdeII	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
NheI	GCTAGC	1 cut(s)	2326
NlaIV	GGNNCC	5 cut(s)	7, 21, 402, 1664, 2295
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	4 cut(s)	892, 1669, 1995, 2259
NsbI	TGCGCA	1 cut(s)	1221
NsiI	ATGCAT	1 cut(s)	301
NspI	RCATGY	2 cut(s)	370, 748
NspV	TTCGAA	1 cut(s)	1364
OliI	CACNNNNGTG	2 cut(s)	1165, 1863
PagI	TCATGA	1 cut(s)	1212
PceI	AGGCCT	1 cut(s)	1487
PciI	ACATGT	1 cut(s)	366
PciSI	GCTCTTC	2 cut(s)	1877, 2157
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	280, 1657, 2041
PinAI	ACCGGT	1 cut(s)	764
PkrI	GCNGC	4 cut(s)	712, 975, 1126, 1880
PleI	GAGTC	6 cut(s)	472, 827, 893, 1077, 1936, 2415
PpsI	GAGTC	6 cut(s)	472, 827, 893, 1077, 1936, 2415
PpuMI	RGGWCCY	3 cut(s)	272, 1593, 1964
PscI	ACATGT	1 cut(s)	366
PsiI	TTATAA	3 cut(s)	1319, 1343, 1938
Psp124BI	GAGCTC	2 cut(s)	609, 1872
Psp5II	RGGWCCY	3 cut(s)	272, 1593, 1964
PspEI	GGTNACC	1 cut(s)	2259
PspFI	CCCAGC	1 cut(s)	1419
PspN4I	GGNNCC	5 cut(s)	7, 21, 402, 1664, 2295
PspPI	GGNCC	6 cut(s)	272, 938, 971, 1593, 1675, 1964
PspPPI	RGGWCCY	3 cut(s)	272, 1593, 1964
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	4 cut(s)	343, 400, 1023, 2293
RsaI	GTAC	5 cut(s)	393, 1443, 1646, 1729, 2156
RsaNI	GTAC	5 cut(s)	392, 1442, 1645, 1728, 2155
RseI	CAYNNNNRTG	6 cut(s)	14, 111, 814, 1165, 1175, 1863
SacI	GAGCTC	2 cut(s)	609, 1872
SapI	GCTCTTC	2 cut(s)	1877, 2157
SaqAI	TTAA	1 cut(s)	1490
SatI	GCNGC	4 cut(s)	711, 974, 1125, 1879
Sau3AI	GATC	8 cut(s)	343, 400, 612, 1023, 1357, 1806, 2034, 2293
Sau96I	GGNCC	6 cut(s)	272, 938, 971, 1593, 1675, 1964
SchI	GAGTC	6 cut(s)	472, 827, 894, 1077, 1937, 2416
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	3 cut(s)	609, 1172, 1872
SfaNI	GCATC	3 cut(s)	286, 1180, 1770
SfcI	CTRYAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	1364
SgrAI	CRCCGGYG	1 cut(s)	764
SinI	GGWCC	4 cut(s)	272, 1593, 1675, 1964
SmiMI	CAYNNNNRTG	6 cut(s)	14, 111, 814, 1165, 1175, 1863
SmlI	CTYRAG	7 cut(s)	215, 480, 608, 1085, 1256, 1481, 2422
SmoI	CTYRAG	7 cut(s)	215, 480, 608, 1085, 1256, 1481, 2422
Sse9I	AATT	9 cut(s)	57, 70, 170, 514, 1090, 1623, 1731, 2456, 2463
SseBI	AGGCCT	1 cut(s)	1487
SsiI	CCGC	9 cut(s)	79, 505, 663, 711, 974, 1271, 1689, 2237, 2387
SspMI	CTAG	5 cut(s)	269, 284, 557, 2298, 2327
SstI	GAGCTC	2 cut(s)	609, 1872
StuI	AGGCCT	1 cut(s)	1487
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	2 cut(s)	15, 654
TaaI	ACNGT	6 cut(s)	691, 1396, 1675, 1703, 1862, 2180
TaiI	ACGT	2 cut(s)	458, 2082
TaqI	TCGA	6 cut(s)	66, 278, 306, 1081, 1233, 1364
TaqII	GACCGA	1 cut(s)	1989
TasI	AATT	9 cut(s)	57, 70, 170, 514, 1090, 1623, 1731, 2456, 2463
TatI	WGTACW	3 cut(s)	391, 1727, 2154
TauI	GCSGC	2 cut(s)	713, 976
TfiI	GAWTC	3 cut(s)	280, 1657, 2041
Tru1I	TTAA	1 cut(s)	1490
Tru9I	TTAA	1 cut(s)	1490
TscAI	CASTG	4 cut(s)	843, 1401, 1706, 2037
TseFI	GTSAC	4 cut(s)	892, 1669, 1995, 2259
TseI	GCWGC	2 cut(s)	1124, 1878
Tsp45I	GTSAC	4 cut(s)	892, 1669, 1995, 2259
TspDTI	ATGAA	7 cut(s)	41, 322, 397, 866, 1018, 1415, 2332
TspGWI	ACGGA	3 cut(s)	413, 1202, 1831
TspRI	CASTG	4 cut(s)	843, 1401, 1706, 2037
VneI	GTGCAC	1 cut(s)	1168
VpaK11BI	GGWCC	4 cut(s)	272, 1593, 1675, 1964
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	2 cut(s)	370, 748
XcmI	CCANNNNNNNNNTGG	2 cut(s)	813, 1117
XspI	CTAG	5 cut(s)	269, 284, 557, 2298, 2327
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.