Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0028454

Physical Location & Seq

Genomic Coordinates Forward (+)

2886684 .. 2887234

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCGCACGGCGGCGGAGCAAGGCAGGTGAAACTGGACCGAGAGAGCGAGCTCAGAATCGAAGTCGGCAACGACGCCCCTCTCAAGCTCCGACTGCTCAACGGCACCGCTGATCGATCTTCGGCACCGAGCTCCCCCCTGATTTCTGGCTCACCTTCCCTCCCAGGCTCAAATTTGCTGTTTTTACTTGGAATGGAGCAACAATTGAGATGGATGGCAGTACTGAAACCGATTACACTGCTGATGAGACCCCAAATATCAGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

90

Amino Acids

9.63

Weight (kDa)

10.23

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028454)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046100.v1.1
pyrus_communis	pycom17g04180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	2 cut(s)	104, 124
AciI	CCGC	3 cut(s)	12, 15, 108
AcsI	RAATTY	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	52, 88, 132
AluI	AGCT	3 cut(s)	52, 88, 132
Alw21I	GWGCWC	2 cut(s)	54, 134
Alw26I	GTCTC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	40, 144
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	2 cut(s)	104, 124
BanII	GRGCYC	2 cut(s)	54, 134
Bbv12I	GWGCWC	2 cut(s)	54, 134
BccI	CCATC	2 cut(s)	204, 208
BceAI	ACGGC	2 cut(s)	25, 118
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	241
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	106, 126
BmrFI	CCNGG	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	39
BshNI	GGYRCC	2 cut(s)	104, 124
BshVI	ATCGAT	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	54, 134
BsmAI	GTCTC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	54, 134
Bsp143I	GATC	2 cut(s)	112, 116
BspACI	CCGC	3 cut(s)	12, 15, 108
BspCNI	CTCAG	1 cut(s)	66
BspDI	ATCGAT	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	106, 126
BspMI	ACCTGC	1 cut(s)	16
BspT107I	GGYRCC	2 cut(s)	104, 124
BspTNI	GGTCTC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	112, 116
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	115, 119
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	112, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	115
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	221
CviJI	RGCY	5 cut(s)	52, 88, 132, 150, 168
CviKI_1	RGCY	5 cut(s)	52, 88, 132, 150, 168
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	114, 118
DpnII	GATC	2 cut(s)	112, 116
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	2 cut(s)	52, 132
Eco24I	GRGCYC	2 cut(s)	54, 134
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	52, 132
EcoICRI	GAGCTC	2 cut(s)	52, 132
EcoRII	CCWGG	1 cut(s)	163
EcoT38I	GRGCYC	2 cut(s)	54, 134
FaiI	YATR	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	226
FriOI	GRGCYC	2 cut(s)	54, 134
Fsp4HI	GCNGC	1 cut(s)	13
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	13
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	2 cut(s)	40, 144
Hpy188I	TCNGA	2 cut(s)	56, 92
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	75
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	112, 116
LmnI	GCTCC	4 cut(s)	17, 93, 137, 196
LpnPI	CCDG	6 cut(s)	11, 20, 132, 150, 152, 177
MalI	GATC	2 cut(s)	114, 118
MboI	GATC	2 cut(s)	112, 116
MboII	GAAGA	1 cut(s)	111
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	54, 134
MluCI	AATT	2 cut(s)	172, 203
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	2 cut(s)	90, 170
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	112, 116
NlaIV	GGNNCC	2 cut(s)	106, 126
PaqCI	CACCTGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	14
Psp124BI	GAGCTC	2 cut(s)	54, 134
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	106, 126
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	2 cut(s)	54, 134
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	2 cut(s)	112, 116
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	54, 134
SetI	ASST	5 cut(s)	30, 54, 90, 134, 157
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	172, 203
SsiI	CCGC	3 cut(s)	12, 15, 108
SstI	GAGCTC	2 cut(s)	54, 134
StyD4I	CCNGG	1 cut(s)	163
TaqI	TCGA	2 cut(s)	60, 115
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	172, 203
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	243
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.