Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0029361

Physical Location & Seq

Genomic Coordinates Forward (+)

11520397 .. 11521184

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCCAGGGTCAGATCGTCGTCGTCGTCGAGTGGATTGAGGTACTGCAACCCGGCGTATTACTTGAAGCGGCCGAAACGCTTGGCTTTGCTCTTCATTGCATTCGTTTGCGTCACTCTTGTTGTCTGGGACCGTCAGACTCTCCTCAGAGAACACGAGGTTGGAAGAAGTTGCCAAGTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

62

Amino Acids

7.06

Weight (kDa)

10.3

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029361)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g07930 pycom17g13920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcoI	YGGCCR	2 cut(s)	3, 71
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AoxI	GGCC	2 cut(s)	3, 71
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	2 cut(s)	7, 53
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	7, 53
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	6
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	134
BseX3I	CGGCCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	5, 73
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	5, 73
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	5, 73
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 51
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	5, 73
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	3 cut(s)	5, 73, 86
CviKI_1	RGCY	3 cut(s)	5, 73, 86
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	2 cut(s)	3, 71
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EclXI	CGGCCG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	5
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	5, 73
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	14, 138, 149
Hpy99I	CGWCG	4 cut(s)	22, 25, 28, 31
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	48, 101
HpyF3I	CTNAG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	19, 66, 112
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	85, 177
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	33, 151, 155
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	7, 53
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	7
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 26
PctI	GAATGC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	7, 53
SetI	ASST	2 cut(s)	44, 162
SinI	GGWCC	1 cut(s)	130
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	5, 51
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	29
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.