Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0029492

Physical Location & Seq

Genomic Coordinates Reverse (-)

21621243 .. 21622566

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGAGCAGCATTTGGAATTGTGCCTCCACAAGAACAGGTTGATGTGGACATAGCAACCCACATAAGTGTCAACGATGATGGCCCCACCCGAAGTTTGCTTTATGTGGAGTCAGCAGATCGCCCTGGATTACTGGTGGATCATCTTGTAAAGATTATAATTGACATTAATGTTGCTGTTGAATCAGGAGAATTCGACACAGAGGGGTTGTTGGCAAAGGCAAAATTTCATGTTAACTACAGGGGTAAACCCCTTATCAAGCCTCTTCAGCAGGTTCTTGCTAACAGTTTACGATATTACTTGAGGCGACCAGCAACTGAGGAGGCGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009744 GO:0009941 GO:0010033 GO:0010319 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034285 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

5.24

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029492)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g23200
rosa_multiflora	Rmu_co8326589.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	191, 224
AcuI	CTGAAG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	66
AlwI	GGATC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	191, 224
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	118, 139
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	118, 139
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	121, 142
BstMBI	GATC	2 cut(s)	118, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	83
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	2 cut(s)	84, 262
CviKI_1	RGCY	2 cut(s)	84, 262
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	120, 141
DpnII	GATC	2 cut(s)	118, 139
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	233
FaiI	YATR	5 cut(s)	53, 65, 105, 158, 231
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	233
HincII	GTYRAC	2 cut(s)	73, 235
HindII	GTYRAC	2 cut(s)	73, 235
HinfI	GANTC	2 cut(s)	110, 182
HpaI	GTTAAC	1 cut(s)	235
Hpy166II	GTNNAC	5 cut(s)	49, 73, 235, 248, 290
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	5 cut(s)	49, 73, 235, 248, 290
HpyCH4III	ACNGT	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	118, 139
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	8 cut(s)	23, 111, 119, 138, 171, 226, 257, 324
Lsp1109I	GCAGC	1 cut(s)	20
MalI	GATC	2 cut(s)	120, 141
MboI	GATC	2 cut(s)	118, 139
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	4 cut(s)	18, 159, 191, 224
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	36, 196, 273, 297, 313, 316
MseI	TTAA	2 cut(s)	168, 234
MslI	CAYNNNNRTG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	2 cut(s)	118, 139
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	168, 234
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	118, 139
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	2 cut(s)	42, 276
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	4 cut(s)	18, 159, 191, 224
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	195
TasI	AATT	4 cut(s)	18, 159, 191, 224
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	168, 234
Tru9I	TTAA	2 cut(s)	168, 234
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	2 cut(s)	191, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.