Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0027930

Physical Location & Seq

Genomic Coordinates Reverse (-)

25886515 .. 25888699

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTACACCTTCATGTTCAATTTTGCCAAAGAACGTGCGGACTTGGGTCCAAAGCTCTTTCTAGCATGGTCCGCATGGGTATGTGTATGGACAGCTGGGTTACTGTTCTTATTTGCTATATTAGGTGCTTGTTCCATAATAAATAGGTTTACAAGAGTGGCTGGGGAGTTGTTTGGTCTGCTAATCGCTATGCTCTTCATGCAGCAAGCCATTAAAGGACTTGTGGATGAGTTTCGCTTACCAGAAAGAGAAGATACTAGTCTACTACAATTTATACCTTCATGGAGGTTTGCAAATGGAATGTTTGCTTTGGTGTTGTCATTTGGCCTTCTTCTCACTGCATTAAAAAGCAGGAAAGCAAGGTCATGGCGTTATGGCACTGGTTGGCTAAGAAGCTTTGTAGCAGACTATGGTGTGCCACTTATGGTTCTGGTGTGGACTGGTGTGTCTTACATTCCAACTAGTAGTGTTCCACATGGCATCCCAAGGCGCCTTTTTAGCCCAAATCCATGGTCGCCTGGCGCATATGACAATTGGACTGTCATTAAGGACATGCTCAATGTTCCGGTCCTCTATATCATCGGAGCTTTCATTCCAGCAACGATGATTGCAGTGCTTTACTATTTTGATCGATCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

214

Amino Acids

24.19

Weight (kDa)

9.65

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	20 - 79	2.9e-07	HCO3- transporter integral membrane domain
HCO3_cotransp	PF00955	100 - 212	5.1e-07	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20851
pyrus_communis	pycom17g27790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	489
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	2 cut(s)	38, 72
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	19
AhlI	ACTAGT	2 cut(s)	257, 461
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	4 cut(s)	55, 95, 396, 587
AluI	AGCT	4 cut(s)	55, 95, 396, 587
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspLEI	GCGC	2 cut(s)	492, 524
AspS9I	GGNCC	3 cut(s)	47, 69, 568
AvaII	GGWCC	3 cut(s)	47, 69, 568
BanI	GGYRCC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	519
BcuI	ACTAGT	2 cut(s)	257, 461
BfaI	CTAG	3 cut(s)	62, 258, 462
BfoI	RGCGCY	1 cut(s)	493
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	3 cut(s)	47, 69, 568
BmgT120I	GGNCC	3 cut(s)	47, 69, 568
BmiI	GGNNCC	2 cut(s)	48, 491
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	489
BoxI	GACNNNNGTC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	485, 509
BsaWI	WCCGGW	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	385, 445
BseBI	CCWGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	631
BseDI	CCNNGG	2 cut(s)	485, 509
BseGI	GGATG	2 cut(s)	232, 480
BseNI	ACTGG	2 cut(s)	385, 445
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	2 cut(s)	95, 161
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	489
BshVI	ATCGAT	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	566
BsnI	GGCC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	628, 632
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	2 cut(s)	38, 72
BspANI	GGCC	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	48, 491
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	385, 445
BssECI	CCNNGG	2 cut(s)	485, 509
BssMI	GATC	2 cut(s)	628, 632
BssNI	GRCGYC	1 cut(s)	490
BssT1I	CCWWGG	2 cut(s)	485, 509
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	105, 541
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	232, 480
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	2 cut(s)	492, 524
BstKTI	GATC	2 cut(s)	631, 635
BstMBI	GATC	2 cut(s)	628, 632
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 199, 498
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	556
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	510
Bsu15I	ATCGAT	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	631
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	232, 480
BtsI	GCAGTG	2 cut(s)	336, 618
BtsIMutI	CAGTG	4 cut(s)	336, 378, 618, 642
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	492, 524
Cfr13I	GGNCC	3 cut(s)	47, 69, 568
ClaI	ATCGAT	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	9 cut(s)	13, 66, 75, 199, 282, 366, 476, 510, 553
CviJI	RGCY	9 cut(s)	55, 95, 161, 209, 327, 388, 396, 501, 587
CviKI_1	RGCY	9 cut(s)	55, 95, 161, 209, 327, 388, 396, 501, 587
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	389
DinI	GGCGCC	1 cut(s)	491
DpnI	GATC	2 cut(s)	630, 634
DpnII	GATC	2 cut(s)	628, 632
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	485, 509
Eco47I	GGWCC	3 cut(s)	47, 69, 568
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	485, 509
EgeI	GGCGCC	1 cut(s)	491
EheI	GGCGCC	1 cut(s)	491
ErhI	CCWWGG	2 cut(s)	485, 509
FaeI	CATG	9 cut(s)	16, 69, 78, 202, 285, 369, 479, 513, 556
FatI	CATG	9 cut(s)	12, 65, 74, 198, 281, 365, 475, 509, 552
FauNDI	CATATG	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	239, 467
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	3 cut(s)	62, 258, 462
GlaI	GCGC	2 cut(s)	491, 523
GluI	GCNGC	1 cut(s)	203
GsaI	CCCAGC	2 cut(s)	99, 165
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	2 cut(s)	492, 524
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	9 cut(s)	16, 69, 78, 202, 285, 369, 479, 513, 556
Hin6I	GCGC	2 cut(s)	490, 522
HinP1I	GCGC	2 cut(s)	490, 522
HindIII	AAGCTT	1 cut(s)	394
HpaII	CCGG	1 cut(s)	566
Hpy166II	GTNNAC	4 cut(s)	6, 150, 263, 438
Hpy188I	TCNGA	1 cut(s)	584
Hpy8I	GTNNAC	4 cut(s)	6, 150, 263, 438
HpyAV	CCTTC	3 cut(s)	19, 288, 338
HpyCH4III	ACNGT	2 cut(s)	105, 541
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	202, 293, 341, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 199, 498
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	9 cut(s)	16, 69, 78, 202, 285, 369, 479, 513, 556
HspAI	GCGC	2 cut(s)	490, 522
KasI	GGCGCC	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	628, 632
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	3 cut(s)	62, 258, 462
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	2 cut(s)	630, 634
MboI	GATC	2 cut(s)	628, 632
MboII	GAAGA	3 cut(s)	187, 263, 323
MfeI	CAATTG	1 cut(s)	532
MluCI	AATT	3 cut(s)	19, 269, 532
Mly113I	GGCGCC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	2 cut(s)	279, 581
MseI	TTAA	3 cut(s)	213, 344, 546
MslI	CAYNNNNRTG	2 cut(s)	11, 79
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	71, 199, 498
NarI	GGCGCC	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	509
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	2 cut(s)	628, 632
NlaIII	CATG	9 cut(s)	16, 69, 78, 202, 285, 369, 479, 513, 556
NlaIV	GGNNCC	2 cut(s)	48, 491
NspI	RCATGY	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	204
PluTI	GGCGCC	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	2 cut(s)	95, 161
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	48, 491
PspPI	GGNCC	3 cut(s)	47, 69, 568
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	11, 79
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	213, 344, 546
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	628, 632
Sau96I	GGNCC	3 cut(s)	47, 69, 568
ScrFI	CCNGG	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	489
SfoI	GGCGCC	1 cut(s)	491
SinI	GGWCC	3 cut(s)	47, 69, 568
SmiMI	CAYNNNNRTG	2 cut(s)	11, 79
SpeI	ACTAGT	2 cut(s)	257, 461
Sse9I	AATT	3 cut(s)	19, 269, 532
SsiI	CCGC	2 cut(s)	38, 72
SspDI	GGCGCC	1 cut(s)	489
SspMI	CTAG	3 cut(s)	62, 258, 462
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	2 cut(s)	485, 509
TaaI	ACNGT	2 cut(s)	105, 541
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	631
TasI	AATT	3 cut(s)	19, 269, 532
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	3 cut(s)	213, 344, 546
Tru9I	TTAA	3 cut(s)	213, 344, 546
TscAI	CASTG	4 cut(s)	343, 385, 618, 642
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	187, 270, 580
TspRI	CASTG	4 cut(s)	343, 385, 618, 642
VpaK11BI	GGWCC	3 cut(s)	47, 69, 568
XceI	RCATGY	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	3 cut(s)	62, 258, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.