pycom2246g00160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002246
OG0022556
Physical Location & Seq
Forward (+)
35051 .. 40420
5370 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGTCGACAACAAGCGAGGCTAGTACAACCCATGTGATTTGTTATGACATGTCGAAATGTGCCCAATCCTCGCTTTATGCGGACAAGCAGCGAGGCTCCAGCTACGAATGCACATTGTCAATGGCATGTCGCAGTACGTTCAATATCGACGTTTTCCCCGCACACTATAATGCTCCCCGTTGTTATAGTTCGTGCGTTGTTAGGCGATTAGTGAATGGCAAAAGTGGACCGTCTAATGTTGGGGTCCTAAGTCATGTGAACATATTTCGTAGTCCAATAAAGCAATGGTTGTTATTGCAATGCAAAGGGCAAAAGAAGTCTTGTCGGACATTAGCTTTGGATGTCTTTTTCCAACTCATGTCAAGACTTTGGATTTTGTCATGTCGGGAAAATGTATGTCGCAACGTGCCAAACCTCGCAATATGTCCATCATGGCATGCCAATGTCATGCCAAGCCTAGCAAAATGTCGACCGTGGCATGCTAGTGACATGCCATGCCTCGCAAAATGTCGACCGTGGCATGCTAGTGACATGCCAAGCCTCGCAAAATGTCGACCGTGGCATGCCAATGTCATGCCAAGTCGACCGTGGCATGCCAGTGACATGCCAAGCCTCGCAAAATGTCGACCGTGGCATGCCAATGACATGCCAATGTCATGGCATGACATGCCAAGCCTCGCAAAATGTCGACCGTGGCATGCCAATGACATGCCAATGTCATGCCAAGCCTCGCAAAATGTCGACCGTGGCATGCCAAGGGTCCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

34.5

Weight (kDa)

9.39

Isoelectric Point (pI)

80.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022556)

Species Orthologous Gene IDs
pyrus_communis pycom12554g00050 pycom12555g00190 pycom2246g00080 pycom2246g00160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 868
AccI GTMKAC 8 cut(s) 5, 469, 511, 553, 583, 625, 688, 741
AciI CCGC 4 cut(s) 80, 159, 842, 863
AclWI GGATC 1 cut(s) 844
AfaI GTAC 2 cut(s) 25, 136
AfiI CCNNNNNNNGG 1 cut(s) 838
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 1 cut(s) 831
AluBI AGCT 2 cut(s) 102, 335
AluI AGCT 2 cut(s) 102, 335
Alw26I GTCTC 1 cut(s) 814
AlwI GGATC 1 cut(s) 844
ApeKI GCWGC 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
AspS9I GGNCC 3 cut(s) 227, 244, 760
AsuC2I CCSGG 1 cut(s) 901
AvaII GGWCC 3 cut(s) 227, 244, 760
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 868
BanII GRGCYC 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 793
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 833
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 1 cut(s) 814
BfaI CTAG 5 cut(s) 21, 458, 483, 525, 806
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 833, 901
Bme18I GGWCC 3 cut(s) 227, 244, 760
BmgT120I GGNCC 3 cut(s) 227, 244, 760
BmiI GGNNCC 5 cut(s) 97, 245, 761, 870, 898
BmrFI CCNGG 2 cut(s) 833, 901
BmsI GCATC 1 cut(s) 814
BpiI GAAGAC 1 cut(s) 793
BpmI CTGGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 901
Bsc4I CCNNNNNNNGG 1 cut(s) 838
Bse118I RCCGGY 1 cut(s) 865
Bse1I ACTGG 1 cut(s) 597
Bse3DI GCAATG 2 cut(s) 290, 305
BseBI CCWGG 1 cut(s) 833
BseGI GGATG 2 cut(s) 346, 850
BseLI CCNNNNNNNGG 1 cut(s) 838
BseMI GCAATG 2 cut(s) 290, 305
BseNI ACTGG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 100
Bsh1285I CGRYCG 7 cut(s) 473, 515, 557, 587, 629, 692, 745
BshNI GGYRCC 1 cut(s) 868
BsiEI CGRYCG 7 cut(s) 473, 515, 557, 587, 629, 692, 745
BsiSI CCGG 2 cut(s) 866, 900
BslI CCNNNNNNNGG 1 cut(s) 838
BsmAI GTCTC 1 cut(s) 814
BsmI GAATGC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 64, 784
Bsp143I GATC 2 cut(s) 791, 836
BspACI CCGC 4 cut(s) 80, 159, 842, 863
BspLI GGNNCC 5 cut(s) 97, 245, 761, 870, 898
BspPI GGATC 1 cut(s) 844
BspT107I GGYRCC 1 cut(s) 868
BsrDI GCAATG 2 cut(s) 290, 305
BsrFI RCCGGY 1 cut(s) 865
BsrI ACTGG 1 cut(s) 597
BssAI RCCGGY 1 cut(s) 865
BssMI GATC 2 cut(s) 791, 836
BssT1I CCWWGG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 9 cut(s) 231, 474, 516, 558, 588, 630, 693, 746, 802
BstAPI GCANNNNNTGC 1 cut(s) 667
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 7 cut(s) 473, 515, 557, 587, 629, 692, 745
BstF5I GGATG 2 cut(s) 346, 850
BstKTI GATC 2 cut(s) 794, 839
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 2 cut(s) 791, 836
BstMCI CGRYCG 7 cut(s) 473, 515, 557, 587, 629, 692, 745
BstMWI GCNNNNNNNGC 2 cut(s) 108, 667
BstNI CCWGG 1 cut(s) 833
BstSCI CCNGG 2 cut(s) 831, 899
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 793
BstXI CCANNNNNNTGG 1 cut(s) 657
BtgI CCRYGG 7 cut(s) 473, 515, 557, 587, 629, 692, 745
BtsCI GGATG 2 cut(s) 346, 850
BtsIMutI CAGTG 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 865
Cfr13I GGNCC 3 cut(s) 227, 244, 760
Csp6I GTAC 2 cut(s) 24, 135
CviQI GTAC 2 cut(s) 24, 135
DdeI CTNAG 1 cut(s) 248
DpnI GATC 2 cut(s) 793, 838
DpnII GATC 2 cut(s) 791, 836
EciI GGCGGA 2 cut(s) 852, 857
Eco130I CCWWGG 1 cut(s) 755
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 3 cut(s) 227, 244, 760
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 831
EcoT14I CCWWGG 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 755
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 8 cut(s) 5, 469, 511, 553, 583, 625, 688, 741
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 2 cut(s) 353, 857
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 5 cut(s) 21, 458, 483, 525, 806
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 82
HapII CCGG 2 cut(s) 866, 900
HincII GTYRAC 8 cut(s) 6, 470, 512, 554, 584, 626, 689, 742
HindII GTYRAC 8 cut(s) 6, 470, 512, 554, 584, 626, 689, 742
HinfI GANTC 1 cut(s) 859
HpaII CCGG 2 cut(s) 866, 900
Hpy188I TCNGA 2 cut(s) 327, 796
Hpy188III TCNNGA 2 cut(s) 363, 386
Hpy99I CGWCG 1 cut(s) 152
HpyCH4III ACNGT 9 cut(s) 231, 474, 516, 558, 588, 630, 693, 746, 802
HpyCH4IV ACGT 3 cut(s) 137, 150, 405
HpyCH4V TGCA 3 cut(s) 111, 298, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 667
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 3 cut(s) 137, 150, 405
KroI GCCGGC 1 cut(s) 865
KroNI GCCGGC 1 cut(s) 867
Kzo9I GATC 2 cut(s) 791, 836
LmnI GCTCC 2 cut(s) 101, 178
LpnPI CCDG 6 cut(s) 112, 610, 818, 845, 879, 913
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 814
MaeI CTAG 5 cut(s) 21, 458, 483, 525, 806
MaeII ACGT 3 cut(s) 137, 150, 405
MaeIII GTNAC 4 cut(s) 485, 527, 599, 847
MalI GATC 2 cut(s) 793, 838
MboI GATC 2 cut(s) 791, 836
MboII GAAGA 1 cut(s) 798
MhlI GDGCHC 2 cut(s) 64, 784
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 2 cut(s) 305, 376
MnlI CCTC 9 cut(s) 10, 79, 86, 425, 509, 551, 623, 686, 739
MroNI GCCGGC 1 cut(s) 865
MspI CCGG 2 cut(s) 866, 900
MspR9I CCNGG 2 cut(s) 833, 901
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 833
MwoI GCNNNNNNNGC 2 cut(s) 108, 667
NaeI GCCGGC 1 cut(s) 867
NciI CCSGG 1 cut(s) 901
NdeII GATC 2 cut(s) 791, 836
NgoMIV GCCGGC 1 cut(s) 865
NlaIV GGNNCC 5 cut(s) 97, 245, 761, 870, 898
NmuCI GTSAC 3 cut(s) 485, 527, 599
PaeI GCATGC 8 cut(s) 440, 482, 524, 566, 596, 638, 701, 754
PciI ACATGT 1 cut(s) 48
PctI GAATGC 1 cut(s) 113
PdiI GCCGGC 1 cut(s) 867
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 244
PscI ACATGT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 5 cut(s) 97, 245, 761, 870, 898
PspPI GGNCC 3 cut(s) 227, 244, 760
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 25, 136
RsaNI GTAC 2 cut(s) 24, 135
SalI GTCGAC 8 cut(s) 4, 468, 510, 552, 582, 624, 687, 740
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 791, 836
Sau96I GGNCC 3 cut(s) 227, 244, 760
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 2 cut(s) 833, 901
SduI GDGCHC 2 cut(s) 64, 784
SetI ASST 7 cut(s) 104, 140, 153, 337, 408, 417, 874
SfaNI GCATC 1 cut(s) 814
SinI GGWCC 3 cut(s) 227, 244, 760
SphI GCATGC 8 cut(s) 440, 482, 524, 566, 596, 638, 701, 754
SsiI CCGC 4 cut(s) 80, 159, 842, 863
SspMI CTAG 5 cut(s) 21, 458, 483, 525, 806
StyD4I CCNGG 2 cut(s) 831, 899
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 9 cut(s) 231, 474, 516, 558, 588, 630, 693, 746, 802
TaiI ACGT 3 cut(s) 140, 153, 408
TatI WGTACW 1 cut(s) 23
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 3 cut(s) 485, 527, 599
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 3 cut(s) 485, 527, 599
TspRI CASTG 1 cut(s) 604
VpaK11BI GGWCC 3 cut(s) 227, 244, 760
XcmI CCANNNNNNNNNTGG 2 cut(s) 282, 585
XmiI GTMKAC 8 cut(s) 5, 469, 511, 553, 583, 625, 688, 741
XspI CTAG 5 cut(s) 21, 458, 483, 525, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.