Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000461

Orthogroup ID

OG0029498

Physical Location & Seq

Genomic Coordinates Forward (+)

120755 .. 122479

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATCTATGGGTCTACTGGAGCTACCCACTTCGATCAATTAGCCAAAATTTTGACCGGATATGAAATCACTGGTGCTCGATCTAGTGGTATTTTTATGGGGATTCTATCTATCGCTGTAGGATTCCTATTCAAGATCACTGCAGTTCCTTTTCGGTATGATTGCCGGGCCCTCTCCTCGTTCCGCCCGCTGGCCTATTGGGATAGCAGCCTTCGGGCTTTGCCTGCCTTTTTTTTTAATTCCGGCTCGGCCCGGGAAAGCGCTGGCAACAACAGAAAGGAAGGGGTCCATGTAGCTGCTGCGCCCGCCCCCTTCTGGGCAGCAGGTTCGGCATCTACTAGAAAAGAGAGAATCCGCTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

122

Amino Acids

13.2

Weight (kDa)

10.41

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029498)

Species	Orthologous Gene IDs
pyrus_communis	pycom461g00170
rosa_chinensis	RchiOBHm_MTg0498491

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	4 cut(s)	184, 188, 306, 355
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	262
AfiI	CCNNNNNNNGG	3 cut(s)	190, 315, 316
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	2 cut(s)	23, 296
AluI	AGCT	2 cut(s)	23, 296
Alw21I	GWGCWC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	262
AoxI	GGCC	3 cut(s)	168, 192, 249
ApaI	GGGCCC	1 cut(s)	172
ApeKI	GCWGC	4 cut(s)	207, 296, 299, 320
ApoI	RAATTY	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	263, 304
AspS9I	GGNCC	4 cut(s)	168, 169, 250, 286
AsuC2I	CCSGG	3 cut(s)	167, 253, 254
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	4 cut(s)	219, 283, 286, 332
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcnI	CCSGG	3 cut(s)	167, 253, 254
BfaI	CTAG	2 cut(s)	84, 339
BfmI	CTRYAG	2 cut(s)	117, 141
BfoI	RGCGCY	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	4 cut(s)	208, 297, 300, 321
BlsI	GCNGC	4 cut(s)	209, 298, 301, 322
Bme1390I	CCNGG	3 cut(s)	167, 253, 254
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	4 cut(s)	168, 169, 250, 286
BmiI	GGNNCC	2 cut(s)	170, 287
BmrFI	CCNGG	3 cut(s)	167, 253, 254
BmsI	GCATC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	3 cut(s)	167, 253, 254
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 315, 316
Bse1I	ACTGG	2 cut(s)	22, 76
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	190, 315, 316
BseNI	ACTGG	2 cut(s)	22, 76
BseRI	GAGGAG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	219, 283, 286, 332
BshFI	GGCC	3 cut(s)	170, 194, 251
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	57, 166, 243, 253
BslI	CCNNNNNNNGG	3 cut(s)	190, 315, 316
BsnI	GGCC	3 cut(s)	170, 194, 251
BsoBI	CYCGRG	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	79, 172
Bsp143I	GATC	4 cut(s)	3, 34, 80, 135
BspACI	CCGC	4 cut(s)	184, 188, 306, 355
BspANI	GGCC	3 cut(s)	170, 194, 251
BspLI	GGNNCC	2 cut(s)	170, 287
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	22, 76
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	3, 34, 80, 135
BstC8I	GCNNGC	5 cut(s)	188, 192, 225, 265, 306
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 304
BstKTI	GATC	4 cut(s)	6, 37, 83, 138
BstMBI	GATC	4 cut(s)	3, 34, 80, 135
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 305, 329
BstSCI	CCNGG	3 cut(s)	165, 251, 252
BstSFI	CTRYAG	2 cut(s)	117, 141
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	219, 283, 286, 332
BsuRI	GGCC	3 cut(s)	170, 194, 251
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	69, 138
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	5 cut(s)	188, 192, 225, 265, 306
CfoI	GCGC	2 cut(s)	263, 304
Cfr13I	GGNCC	4 cut(s)	168, 169, 250, 286
Cfr9I	CCCGGG	1 cut(s)	252
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	9 cut(s)	23, 44, 170, 194, 210, 218, 246, 251, 296
CviKI_1	RGCY	9 cut(s)	23, 44, 170, 194, 210, 218, 246, 251, 296
DpnI	GATC	4 cut(s)	5, 36, 82, 137
DpnII	GATC	4 cut(s)	3, 34, 80, 135
EciI	GGCGGA	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	286
Eco47III	AGCGCT	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	1 cut(s)	293
FaiI	YATR	5 cut(s)	9, 63, 98, 159, 291
FatI	CATG	1 cut(s)	289
FauI	CCCGC	2 cut(s)	195, 313
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	4 cut(s)	208, 297, 300, 321
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	208, 297, 300, 321
FspBI	CTAG	2 cut(s)	84, 339
GlaI	GCGC	2 cut(s)	262, 303
GluI	GCNGC	4 cut(s)	208, 297, 300, 321
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	170, 194, 251
HapII	CCGG	4 cut(s)	57, 166, 243, 253
HhaI	GCGC	2 cut(s)	263, 304
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	2 cut(s)	261, 302
HinP1I	GCGC	2 cut(s)	261, 302
HinfI	GANTC	3 cut(s)	103, 123, 351
HpaII	CCGG	4 cut(s)	57, 166, 243, 253
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	221, 275, 322
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 305, 329
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	2 cut(s)	261, 302
Kzo9I	GATC	4 cut(s)	3, 34, 80, 135
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	4 cut(s)	219, 283, 286, 332
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	84, 339
MalI	GATC	4 cut(s)	5, 36, 82, 137
MboI	GATC	4 cut(s)	3, 34, 80, 135
MhlI	GDGCHC	2 cut(s)	79, 172
MluCI	AATT	3 cut(s)	38, 48, 238
MnlI	CCTC	2 cut(s)	182, 187
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	4 cut(s)	57, 166, 243, 253
MspR9I	CCNGG	3 cut(s)	167, 253, 254
MwoI	GCNNNNNNNGC	3 cut(s)	224, 305, 329
NciI	CCSGG	3 cut(s)	167, 253, 254
NdeII	GATC	4 cut(s)	3, 34, 80, 135
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	170, 287
NmeAIII	GCCGAG	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	103, 123, 351
PkrI	GCNGC	4 cut(s)	209, 298, 301, 322
PspN4I	GGNNCC	2 cut(s)	170, 287
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	168, 169, 250, 286
PstI	CTGCAG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	208, 297, 300, 321
Sau3AI	GATC	4 cut(s)	3, 34, 80, 135
Sau96I	GGNCC	4 cut(s)	168, 169, 250, 286
ScrFI	CCNGG	3 cut(s)	167, 253, 254
SduI	GDGCHC	2 cut(s)	79, 172
SetI	ASST	3 cut(s)	25, 298, 328
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	2 cut(s)	117, 141
SinI	GGWCC	1 cut(s)	286
SmaI	CCCGGG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	38, 48, 238
SsiI	CCGC	4 cut(s)	184, 188, 306, 355
SspMI	CTAG	2 cut(s)	84, 339
StyD4I	CCNGG	3 cut(s)	165, 251, 252
TaqI	TCGA	2 cut(s)	33, 79
TasI	AATT	3 cut(s)	38, 48, 238
TfiI	GAWTC	3 cut(s)	103, 123, 351
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	76, 145
TseI	GCWGC	4 cut(s)	207, 296, 299, 320
TspDTI	ATGAA	1 cut(s)	78
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	2 cut(s)	76, 145
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	48
XmaI	CCCGGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	2 cut(s)	84, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.