Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029498

Physical Location & Seq

Genomic Coordinates Forward (+)

90463 .. 90703

Gene Structure 241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGATCTATGGGTCTACTGGAGCTACCCACTTCGATCAATTAGCCAAAATTTTGACCGGATATGAAATCACTGGTGCTCGATCTAGTGGTATTTTTATGGGGATTCTATCTATCGCTGTAGGATTCCTATTCAAGATCACTGCAGTTCCTTTTCGGGCGGCTGTAGGACGGACGGCCGCCTATAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

63

Amino Acids

6.77

Weight (kDa)

10.16

Isoelectric Point (pI)

20.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proton_antipo_M	PF00361	1 - 52	2.2e-06	NADH:quinone oxidoreductase/Mrp antiporter, TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029498)

Species	Orthologous Gene IDs
pyrus_communis	pycom461g00170
rosa_chinensis	RchiOBHm_MTg0498491

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	2 cut(s)	158, 177
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	183, 186
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	4 cut(s)	117, 141, 162, 181
BisI	GCNGC	2 cut(s)	159, 177
BlsI	GCNGC	2 cut(s)	160, 178
BpmI	CTGGAG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 186
Bse1I	ACTGG	2 cut(s)	22, 76
BseLI	CCNNNNNNNGG	2 cut(s)	183, 186
BseNI	ACTGG	2 cut(s)	22, 76
BseX3I	CGGCCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	183, 186
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	3, 34, 80, 135
BspACI	CCGC	2 cut(s)	158, 177
BspANI	GGCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	22, 76
BssMI	GATC	4 cut(s)	3, 34, 80, 135
BstKTI	GATC	4 cut(s)	6, 37, 83, 138
BstMBI	GATC	4 cut(s)	3, 34, 80, 135
BstMCI	CGRYCG	1 cut(s)	177
BstSFI	CTRYAG	4 cut(s)	117, 141, 162, 181
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	69, 138
CviJI	RGCY	4 cut(s)	23, 44, 161, 176
CviKI_1	RGCY	4 cut(s)	23, 44, 161, 176
DpnI	GATC	4 cut(s)	5, 36, 82, 137
DpnII	GATC	4 cut(s)	3, 34, 80, 135
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	174
Eco52I	CGGCCG	1 cut(s)	174
FaiI	YATR	4 cut(s)	9, 63, 98, 183
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	159, 177
Fsp4HI	GCNGC	2 cut(s)	159, 177
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	159, 177
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	57
HinfI	GANTC	2 cut(s)	103, 123
HpaII	CCGG	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	3, 34, 80, 135
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	3, 57, 70
MaeI	CTAG	1 cut(s)	84
MalI	GATC	4 cut(s)	5, 36, 82, 137
MboI	GATC	4 cut(s)	3, 34, 80, 135
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	38, 48
MspI	CCGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	3, 34, 80, 135
PfeI	GAWTC	2 cut(s)	103, 123
PkrI	GCNGC	2 cut(s)	160, 178
PstI	CTGCAG	1 cut(s)	145
SatI	GCNGC	2 cut(s)	159, 177
Sau3AI	GATC	4 cut(s)	3, 34, 80, 135
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	2 cut(s)	25, 188
SfcI	CTRYAG	4 cut(s)	117, 141, 162, 181
SgeI	CNNG	7 cut(s)	30, 69, 84, 90, 96, 145, 167
Sse9I	AATT	2 cut(s)	38, 48
SsiI	CCGC	2 cut(s)	158, 177
SspMI	CTAG	1 cut(s)	84
TaqI	TCGA	2 cut(s)	33, 79
TasI	AATT	2 cut(s)	38, 48
TauI	GCSGC	2 cut(s)	161, 179
TfiI	GAWTC	2 cut(s)	103, 123
TscAI	CASTG	2 cut(s)	76, 145
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	76, 145
XapI	RAATTY	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.