pycom520g00960

Cleft lip and palate transmembrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
OG0029500
Physical Location & Seq
Reverse (-)
720465 .. 723347
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGTTTGACCGGTTTTGGTTGGGGGAATTAGAGATTCGATCTCATCCAATTATAAACCACTCCAAATATCTCTCTCTCACACTCCTTACTCCCTCACGCCTCCACTTCGATCTCACCGACCCCTCTCTCTCGTCTCTGACACCTAAATCTCAGCGGAGGCAAAGCCACAGAGCAGCAGTTCCTCCAGCTGAGGAGGAGGAGAAGGAGAAGAAGAAGATGGCGCCGCCAGCGGCAGCGGCAGCGGAAGGGCAAGTCCAAGGCGAACAGCAGCAAGGAAGAGGAGGAGGGTTTGGTCAGAGTATCACTGGAATCATACGGATGGCTGTGTTTTGGTACTTCGCTTCCAAATTCTTTTCTCCGAAGAAGGCTCCTTCTGACCCATCTCAGCTCAGCTCCAATCTCTTCCAGAAGGCTGAACCCTTGGATATGTGGCTGTATCTTTCCGAACGTGAAAAGTTCAGTGAATTCGGCAGTGAACGTGAACTTATATGGCATGAAACTAATATCCCGTATGCTGTCTGGGGGCCAGAGAGTACCCGGACTCTGTCTACGAAGTACTATCCATCTGAGGCATTAAAGCACAATGGAAGTCTCTATGCTCATGTGTTCTTTGCACACTCTGGTTACCCTCCAGACCCATCTGATCCGGAGTATATCCCTCTTGCTGCATTTGGAAAGACACACTCTATTGTGACACACCTACCAAAGTTAAAAGCTGACAAAAAGAGGAGTTTGCTGGGGGACTCGACAGAGTCTGATGAGAAGGAACCACTTATTAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLPTM1

Protein Analysis

262

Amino Acids

29.49

Weight (kDa)

6.81

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLPTM1 PF05602 103 - 256 3.7e-27 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029500)

Species Orthologous Gene IDs
pyrus_communis pycom520g00960
rosa_laevigata RLG00000023194

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 5 cut(s) 154, 224, 230, 236, 242
AclWI GGATC 1 cut(s) 638
AcsI RAATTY 2 cut(s) 347, 464
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 3 cut(s) 335, 535, 557
AgeI ACCGGT 1 cut(s) 9
AluBI AGCT 4 cut(s) 188, 388, 393, 716
AluI AGCT 4 cut(s) 188, 388, 393, 716
Alw26I GTCTC 2 cut(s) 138, 596
AlwI GGATC 1 cut(s) 638
AlwNI CAGNNNCTG 1 cut(s) 755
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 5 cut(s) 173, 233, 239, 268, 665
ApoI RAATTY 2 cut(s) 347, 464
AsiGI ACCGGT 1 cut(s) 9
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 220
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 5 cut(s) 185, 245, 251, 280, 652
BccI CCATC 5 cut(s) 211, 313, 388, 571, 646
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 138, 596
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 8 cut(s) 174, 224, 231, 234, 237, 240, 269, 666
BlpI GCTNAGC 1 cut(s) 389
BlsI GCNGC 8 cut(s) 175, 225, 232, 235, 238, 241, 270, 667
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 4 cut(s) 222, 369, 525, 768
BmrFI CCNGG 1 cut(s) 538
BpmI CTGGAG 2 cut(s) 168, 615
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 538
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 256, 420
BsaWI WCCGGW 2 cut(s) 9, 646
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 646
BseDI CCNNGG 2 cut(s) 256, 420
BseGI GGATG 2 cut(s) 43, 324
BseMII CTCAG 5 cut(s) 164, 180, 398, 403, 558
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 6 cut(s) 206, 209, 212, 294, 297, 742
BseXI GCAGC 5 cut(s) 185, 245, 251, 280, 652
BseYI CCCAGC 1 cut(s) 736
BshFI GGCC 1 cut(s) 526
BshNI GGYRCC 1 cut(s) 220
BshTI ACCGGT 1 cut(s) 9
BsiSI CCGG 3 cut(s) 10, 538, 647
BslFI GGGAC 1 cut(s) 755
BsmAI GTCTC 2 cut(s) 138, 596
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 755
BsnI GGCC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 3 cut(s) 38, 109, 643
Bsp1720I GCTNAGC 1 cut(s) 389
BspACI CCGC 5 cut(s) 154, 224, 230, 236, 242
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 5 cut(s) 163, 181, 397, 402, 559
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 4 cut(s) 222, 369, 525, 768
BspPI GGATC 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 256, 420
BssMI GATC 3 cut(s) 38, 109, 643
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 256, 420
Bst6I CTCTTC 2 cut(s) 271, 407
BstACI GRCGYC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 5 cut(s) 150, 189, 384, 389, 567
BstEII GGTNACC 1 cut(s) 623
BstF5I GGATG 2 cut(s) 43, 324
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 3 cut(s) 41, 112, 646
BstMAI GTCTC 2 cut(s) 138, 596
BstMBI GATC 3 cut(s) 38, 109, 643
BstMWI GCNNNNNNNGC 3 cut(s) 227, 236, 239
BstPI GGTNACC 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 536
BstV1I GCAGC 5 cut(s) 185, 245, 251, 280, 652
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 2 cut(s) 43, 324
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 3 cut(s) 303, 466, 478
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 524
Csp6I GTAC 3 cut(s) 334, 534, 556
CspAI ACCGGT 1 cut(s) 9
CviAII CATG 2 cut(s) 494, 602
CviQI GTAC 3 cut(s) 334, 534, 556
DdeI CTNAG 5 cut(s) 150, 189, 384, 389, 567
DinI GGCGCC 1 cut(s) 222
DpnI GATC 3 cut(s) 40, 111, 645
DpnII GATC 3 cut(s) 38, 109, 643
Eam1104I CTCTTC 2 cut(s) 271, 407
EarI CTCTTC 2 cut(s) 271, 407
Eco130I CCWWGG 2 cut(s) 256, 420
Eco91I GGTNACC 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 256, 420
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 256, 420
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 497, 605
FaqI GGGAC 1 cut(s) 755
FatI CATG 2 cut(s) 493, 601
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 8 cut(s) 174, 224, 231, 234, 237, 240, 269, 666
FokI GGATG 2 cut(s) 30, 331
Fsp4HI GCNGC 8 cut(s) 174, 224, 231, 234, 237, 240, 269, 666
GlaI GCGC 1 cut(s) 222
GluI GCNGC 8 cut(s) 174, 224, 231, 234, 237, 240, 269, 666
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 2 cut(s) 168, 615
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 1 cut(s) 526
HapII CCGG 3 cut(s) 10, 538, 647
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 2 cut(s) 497, 605
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 5 cut(s) 34, 309, 541, 743, 752
HpaII CCGG 3 cut(s) 10, 538, 647
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 476, 482, 549
Hpy188I TCNGA 8 cut(s) 138, 297, 360, 376, 445, 568, 643, 757
Hpy188III TCNNGA 3 cut(s) 406, 632, 647
Hpy8I GTNNAC 3 cut(s) 476, 482, 549
HpyAV CCTTC 6 cut(s) 196, 239, 358, 381, 403, 757
HpyCH4IV ACGT 2 cut(s) 448, 478
HpyCH4V TGCA 2 cut(s) 614, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 236, 239
HpyF3I CTNAG 5 cut(s) 150, 189, 384, 389, 567
HpySE526I ACGT 2 cut(s) 448, 478
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 2 cut(s) 497, 605
HspAI GCGC 1 cut(s) 221
KasI GGCGCC 1 cut(s) 220
Kpn2I TCCGGA 1 cut(s) 646
Kzo9I GATC 3 cut(s) 38, 109, 643
LmnI GCTCC 2 cut(s) 373, 398
Lsp1109I GCAGC 5 cut(s) 185, 245, 251, 280, 652
MaeII ACGT 2 cut(s) 448, 478
MaeIII GTNAC 2 cut(s) 623, 691
MalI GATC 3 cut(s) 40, 111, 645
MboI GATC 3 cut(s) 38, 109, 643
MboII GAAGA 6 cut(s) 220, 223, 226, 288, 373, 394
MluCI AATT 4 cut(s) 26, 48, 347, 464
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 3 cut(s) 535, 737, 761
MroI TCCGGA 1 cut(s) 646
MseI TTAA 3 cut(s) 575, 710, 777
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 5 cut(s) 154, 188, 230, 236, 242
MspI CCGG 3 cut(s) 10, 538, 647
MspR9I CCNGG 1 cut(s) 538
MwoI GCNNNNNNNGC 3 cut(s) 227, 236, 239
NarI GGCGCC 1 cut(s) 221
NciI CCSGG 1 cut(s) 538
NdeII GATC 3 cut(s) 38, 109, 643
NlaIII CATG 2 cut(s) 497, 605
NlaIV GGNNCC 4 cut(s) 222, 369, 525, 768
NmuCI GTSAC 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 34, 309
PflFI GACNNNGTC 2 cut(s) 544, 751
PinAI ACCGGT 1 cut(s) 9
PkrI GCNGC 8 cut(s) 175, 225, 232, 235, 238, 241, 270, 667
PleI GAGTC 3 cut(s) 535, 737, 760
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 3 cut(s) 535, 737, 760
PsiI TTATAA 1 cut(s) 53
PspEI GGTNACC 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 736
PspN4I GGNNCC 4 cut(s) 222, 369, 525, 768
PspPI GGNCC 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 755
PsyI GACNNNGTC 2 cut(s) 544, 751
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 335, 535, 557
RsaNI GTAC 3 cut(s) 334, 534, 556
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 3 cut(s) 575, 710, 777
SatI GCNGC 8 cut(s) 174, 224, 231, 234, 237, 240, 269, 666
Sau3AI GATC 3 cut(s) 38, 109, 643
Sau96I GGNCC 1 cut(s) 524
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 3 cut(s) 535, 737, 761
ScrFI CCNGG 1 cut(s) 538
SetI ASST 8 cut(s) 145, 190, 390, 395, 451, 481, 702, 718
SfoI GGCGCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 4 cut(s) 26, 48, 347, 464
SsiI CCGC 5 cut(s) 154, 224, 230, 236, 242
SspDI GGCGCC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 2 cut(s) 256, 420
TaiI ACGT 2 cut(s) 451, 481
TaqI TCGA 3 cut(s) 37, 108, 746
TasI AATT 4 cut(s) 26, 48, 347, 464
TatI WGTACW 1 cut(s) 555
TauI GCSGC 3 cut(s) 226, 233, 239
TfiI GAWTC 2 cut(s) 34, 309
Tru1I TTAA 3 cut(s) 575, 710, 777
Tru9I TTAA 3 cut(s) 575, 710, 777
TscAI CASTG 3 cut(s) 310, 466, 478
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 5 cut(s) 173, 233, 239, 268, 665
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 1 cut(s) 510
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 3 cut(s) 310, 466, 478
Tth111I GACNNNGTC 2 cut(s) 544, 751
XapI RAATTY 2 cut(s) 347, 464
XmiI GTMKAC 1 cut(s) 548
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.