RLG00000023194

Cleft lip and palate transmembrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0029500
Physical Location & Seq
Forward (+)
19743079 .. 19743625
547 bp
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UTR
Exon/CDS
Intron
RLM00000023194

Sequence Viewer

Length: 402 bp
ATGGCGCCGCCAGCGCCCGTCGCCGCCGCAGCCGCAGCAGATGGGCAAGTCCAAGGCGGACGGCAGCAAGGAGGGATTGGTCAGAGCATCGGTGGACTCATACGGATGGCTGTAATTTGGTACTTCGCTTCCAAATTCTTTTCCTCTTCCAAAAAGCCTTCTGATCCTTCTCAGCTCAGCTCCAATATCTTCCCCAAGGGCGAACCACTGGATGTGTGGTTCTATATAACTGAACATGAGAAGTTCAATGAATTCGGGAGTGAAAGCGCGCTTGTATGGCATGAAACTAATATCCCCTACGCTACCTATGGGCCGGAGAGTACCAGGACTCTGTCTATGAAGTACTATCCATCTGAGGTATCACTTATAGTCCAGTATAATCCGTTGGTTAATTTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLPTM1

Protein Analysis

134

Amino Acids

14.59

Weight (kDa)

5.6

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLPTM1 PF05602 33 - 114 9.4e-09 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029500)

Species Orthologous Gene IDs
pyrus_communis pycom520g00960
rosa_laevigata RLG00000023194

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 269
AciI CCGC 5 cut(s) 8, 24, 27, 33, 57
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 2 cut(s) 134, 251
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 122, 322, 344
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 323
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 2 cut(s) 175, 180
AluI AGCT 2 cut(s) 175, 180
AlwI GGATC 1 cut(s) 158
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 29, 35, 64
ApoI RAATTY 2 cut(s) 134, 251
AspLEI GCGC 4 cut(s) 7, 16, 269, 271
AspS9I GGNCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 41, 47, 76
BccI CCATC 3 cut(s) 35, 100, 358
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 325
BfoI RGCGCY 2 cut(s) 8, 17
BisI GCNGC 7 cut(s) 8, 24, 27, 30, 33, 36, 65
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 7 cut(s) 9, 25, 28, 31, 34, 37, 66
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 52, 195
Bse1I ACTGG 2 cut(s) 213, 373
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 52, 195
BseGI GGATG 2 cut(s) 111, 217
BseMII CTCAG 3 cut(s) 185, 190, 345
BseNI ACTGG 2 cut(s) 213, 373
BsePI GCGCGC 1 cut(s) 267
BseXI GCAGC 3 cut(s) 41, 47, 76
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 314
BsnI GGCC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 163
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 5 cut(s) 8, 24, 27, 33, 57
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 3 cut(s) 184, 189, 346
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 213, 373
BssECI CCNNGG 2 cut(s) 52, 195
BssHII GCGCGC 1 cut(s) 267
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 52, 195
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 12, 269
BstDEI CTNAG 3 cut(s) 171, 176, 354
BstF5I GGATG 2 cut(s) 111, 217
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 2 cut(s) 8, 17
BstHHI GCGC 4 cut(s) 7, 16, 269, 271
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 7 cut(s) 11, 13, 20, 29, 32, 35, 277
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 323
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 41, 47, 76
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 111, 217
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 12, 269
CfoI GCGC 4 cut(s) 7, 16, 269, 271
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 3 cut(s) 121, 321, 343
CviAII CATG 2 cut(s) 236, 281
CviJI RGCY 6 cut(s) 32, 110, 157, 175, 180, 313
CviKI_1 RGCY 6 cut(s) 32, 110, 157, 175, 180, 313
CviQI GTAC 3 cut(s) 121, 321, 343
DdeI CTNAG 3 cut(s) 171, 176, 354
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 52, 195
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 52, 195
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 52, 195
FaeI CATG 2 cut(s) 239, 284
FatI CATG 2 cut(s) 235, 280
Fnu4HI GCNGC 7 cut(s) 8, 24, 27, 30, 33, 36, 65
FokI GGATG 2 cut(s) 118, 224
Fsp4HI GCNGC 7 cut(s) 8, 24, 27, 30, 33, 36, 65
GlaI GCGC 4 cut(s) 6, 15, 268, 270
GluI GCNGC 7 cut(s) 8, 24, 27, 30, 33, 36, 65
HaeII RGCGCY 2 cut(s) 8, 17
HaeIII GGCC 1 cut(s) 313
HapII CCGG 1 cut(s) 314
HhaI GCGC 4 cut(s) 7, 16, 269, 271
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 239, 284
Hin6I GCGC 4 cut(s) 5, 14, 267, 269
HinP1I GCGC 4 cut(s) 5, 14, 267, 269
HinfI GANTC 2 cut(s) 96, 328
HpaII CCGG 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 84, 163, 355
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 168, 177
HpyCH4V TGCA 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 13, 20, 29, 32, 35, 277
HpyF3I CTNAG 3 cut(s) 171, 176, 354
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 239, 284
HspAI GCGC 4 cut(s) 5, 14, 267, 269
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 24, 194, 310, 327, 337, 386
Lsp1109I GCAGC 3 cut(s) 41, 47, 76
LweI GCATC 1 cut(s) 96
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 138, 181
MluCI AATT 4 cut(s) 114, 134, 251, 391
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 90, 322
MnlI CCTC 3 cut(s) 65, 154, 349
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 7 cut(s) 11, 13, 20, 29, 32, 35, 277
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 239, 284
NlaIV GGNNCC 1 cut(s) 6
PauI GCGCGC 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 331
PkrI GCNGC 7 cut(s) 9, 25, 28, 31, 34, 37, 66
PleI GAGTC 2 cut(s) 90, 322
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 90, 322
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 331
PteI GCGCGC 1 cut(s) 267
RsaI GTAC 3 cut(s) 122, 322, 344
RsaNI GTAC 3 cut(s) 121, 321, 343
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 7 cut(s) 8, 24, 27, 30, 33, 36, 65
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 2 cut(s) 90, 322
ScrFI CCNGG 1 cut(s) 325
SetI ASST 4 cut(s) 177, 182, 308, 360
SfaNI GCATC 1 cut(s) 96
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 4 cut(s) 114, 134, 251, 391
SsiI CCGC 5 cut(s) 8, 24, 27, 33, 57
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 2 cut(s) 52, 195
TasI AATT 4 cut(s) 114, 134, 251, 391
TatI WGTACW 1 cut(s) 342
TauI GCSGC 4 cut(s) 10, 26, 29, 35
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 213
TseI GCWGC 3 cut(s) 29, 35, 64
TspDTI ATGAA 3 cut(s) 264, 297, 353
TspGWI ACGGA 2 cut(s) 118, 372
TspRI CASTG 1 cut(s) 213
Tth111I GACNNNGTC 1 cut(s) 331
XapI RAATTY 2 cut(s) 134, 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.