Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030508

Physical Location & Seq

Genomic Coordinates Forward (+)

3387660 .. 3388851

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGTCGGAGCGGCGAGGACCGGTTCGAGATCGCGTTCTTCGACCTGGAGACGACCCGACCCGGTCAGGGCTTCGCCTTATTGGAATTCGGATCCATCCTTGTTTGCCCCAGGAAGCTGATTGAGCTCGAGAGCTACTCCACTCTAATCCGACCCGCCGACCTCAATTCCATCAACTCCTTGTCCGTCCGCTGTAACGGCATTACCCGAGACGCATCATCGCCGCCCCGGGCTTCGATGAGATCGCCGATAGAGTTTTCGACATTCTCCATGAACGTATATGGGCCGGTCATCAGTGGCGGATCCAGGATTGGAACCTTGGACGGGCTGGATTTGTTAAACCAAAAAAAAATTATATATATATATATATATATATATATATATATATATATACATATAAAAACTCCGATATTTGCTGACCTGCAAATGCATTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

146

Amino Acids

16.54

Weight (kDa)

7.76

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030508)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0181911
rosa_laevigata	RLG00000002031

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	429
AccBSI	CCGCTC	1 cut(s)	12
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	12, 156, 190, 224, 300
AclWI	GGATC	4 cut(s)	87, 100, 297, 310
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	68, 324
AgeI	ACCGGT	1 cut(s)	21
AjnI	CCWGG	3 cut(s)	45, 110, 305
AluBI	AGCT	3 cut(s)	118, 127, 135
AluI	AGCT	3 cut(s)	118, 127, 135
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	44, 204
AlwI	GGATC	4 cut(s)	87, 100, 297, 310
Ama87I	CYCGRG	3 cut(s)	128, 207, 228
AoxI	GGCC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	86
AsiGI	ACCGGT	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	19, 284
AsuC2I	CCSGG	3 cut(s)	63, 229, 230
AvaI	CYCGRG	3 cut(s)	128, 207, 228
AvaII	GGWCC	1 cut(s)	19
BamHI	GGATCC	2 cut(s)	92, 302
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	2 cut(s)	104, 179
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	3 cut(s)	47, 112, 307
BcnI	CCSGG	3 cut(s)	63, 229, 230
BcoDI	GTCTC	2 cut(s)	44, 204
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	2 cut(s)	13, 224
BlsI	GCNGC	2 cut(s)	14, 225
Bme1390I	CCNGG	6 cut(s)	47, 63, 112, 229, 230, 307
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	3 cut(s)	128, 207, 228
BmgT120I	GGNCC	2 cut(s)	19, 284
BmiI	GGNNCC	3 cut(s)	94, 304, 316
BmrFI	CCNGG	6 cut(s)	47, 63, 112, 229, 230, 307
BmsI	GCATC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	68
BpuMI	CCSGG	3 cut(s)	63, 229, 230
BsaJI	CCNNGG	4 cut(s)	110, 227, 228, 318
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 324
Bse118I	RCCGGY	2 cut(s)	21, 286
BseBI	CCWGG	3 cut(s)	47, 112, 307
BseDI	CCNNGG	4 cut(s)	110, 227, 228, 318
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	68, 324
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	286
BshTI	ACCGGT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	3 cut(s)	128, 207, 228
BsiSI	CCGG	4 cut(s)	22, 63, 229, 287
BslI	CCNNNNNNNGG	2 cut(s)	68, 324
BsmAI	GTCTC	2 cut(s)	44, 204
BsmBI	CGTCTC	2 cut(s)	44, 204
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	3 cut(s)	128, 207, 228
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	30, 92, 242, 302
BspACI	CCGC	5 cut(s)	12, 156, 190, 224, 300
BspANI	GGCC	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	3 cut(s)	94, 304, 316
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	4 cut(s)	87, 100, 297, 310
BsrBI	CCGCTC	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	21, 286
BssAI	RCCGGY	2 cut(s)	21, 286
BssECI	CCNNGG	4 cut(s)	110, 227, 228, 318
BssMI	GATC	4 cut(s)	30, 92, 242, 302
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	47, 112, 307
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	33, 95, 245, 305
BstMAI	GTCTC	2 cut(s)	44, 204
BstMBI	GATC	4 cut(s)	30, 92, 242, 302
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 198
BstNI	CCWGG	3 cut(s)	47, 112, 307
BstSCI	CCNGG	6 cut(s)	45, 61, 110, 227, 228, 305
BstUI	CGCG	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	92, 302
BstYI	RGATCY	2 cut(s)	92, 302
BsuRI	GGCC	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	429
Cfr10I	RCCGGY	2 cut(s)	21, 286
Cfr13I	GGNCC	2 cut(s)	19, 284
Cfr9I	CCCGGG	1 cut(s)	228
CseI	GACGC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	21
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	72, 118, 127, 135, 233, 286, 328
CviKI_1	RGCY	7 cut(s)	72, 118, 127, 135, 233, 286, 328
DpnI	GATC	4 cut(s)	32, 94, 244, 304
DpnII	GATC	4 cut(s)	30, 92, 242, 302
EciI	GGCGGA	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	3 cut(s)	128, 207, 228
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	45, 110, 305
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	2 cut(s)	44, 204
FaeI	CATG	1 cut(s)	274
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	13, 224
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	13, 224
GluI	GCNGC	2 cut(s)	13, 224
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	4 cut(s)	22, 63, 229, 287
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	274
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	4 cut(s)	22, 63, 229, 287
Hpy188I	TCNGA	4 cut(s)	9, 92, 152, 408
Hpy188III	TCNNGA	2 cut(s)	28, 130
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	424, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 198
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	30, 92, 242, 302
LmnI	GCTCC	1 cut(s)	9
LweI	GCATC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	4 cut(s)	32, 94, 244, 304
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	4 cut(s)	30, 92, 242, 302
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	2 cut(s)	92, 302
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	86, 166, 351
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	10, 173
Mph1103I	ATGCAT	1 cut(s)	432
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	4 cut(s)	22, 63, 229, 287
MspR9I	CCNGG	6 cut(s)	47, 63, 112, 229, 230, 307
MvaI	CCWGG	3 cut(s)	47, 112, 307
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	124, 198
NciI	CCSGG	3 cut(s)	63, 229, 230
NdeII	GATC	4 cut(s)	30, 92, 242, 302
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	3 cut(s)	94, 304, 316
NsiI	ATGCAT	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	14, 225
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	45, 110, 305
PspGI	CCWGG	3 cut(s)	45, 110, 305
PspN4I	GGNNCC	3 cut(s)	94, 304, 316
PspPI	GGNCC	2 cut(s)	19, 284
PsuI	RGATCY	2 cut(s)	92, 302
PsyI	GACNNNGTC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	13, 224
Sau3AI	GATC	4 cut(s)	30, 92, 242, 302
Sau96I	GGNCC	2 cut(s)	19, 284
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	6 cut(s)	47, 63, 112, 229, 230, 307
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	8 cut(s)	48, 120, 129, 137, 165, 279, 320, 423
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	128
SmaI	CCCGGG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	86, 166, 351
SsiI	CCGC	5 cut(s)	12, 156, 190, 224, 300
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	45, 61, 110, 227, 228, 305
StyI	CCWWGG	1 cut(s)	318
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	5 cut(s)	27, 42, 129, 236, 260
TasI	AATT	3 cut(s)	86, 166, 351
TauI	GCSGC	2 cut(s)	15, 226
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	175
TspMI	CCCGGG	1 cut(s)	228
TspRI	CASTG	1 cut(s)	301
Tth111I	GACNNNGTC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	128
XmaI	CCCGGG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.