Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0030508

Physical Location & Seq

Genomic Coordinates Reverse (-)

24528273 .. 24529697

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATGGTCCTAGCGTCTTGGCACCTAAGAGTGGCGAGGACCGGTTCGAGATCACGTTCTTCGACGTCGAGACAATAGTGTTGACCCGACCCAGTCAGGGATTCGCCTTATTGGAATTCAAATCCATCCTCGTTTGCCCCAGGAAGCCGATTGAGCTCGAGAGCTACTCCACTCTCGTCCGACCCGCCAACCTCAATTCTATCAACTCTTTGTCTGTCCGCTATAACGGCATTACACGAGACTCCTTCATCACGGCCCCGAGCTTTGATAAGATAGAGTTTTCGACATTCTCCATGGTTGGTTCCTATTTTCGAGTCCAGATTGGCAGGGTGGCAGGGTTTGGCACAGTTTCGAGTCTAGGTTCAAAGCGTTTTGGGGATACATGGGTATCAAAACTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

135

Amino Acids

14.87

Weight (kDa)

9.2

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030508)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0181911
rosa_laevigata	RLG00000002031

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	2 cut(s)	186, 220
AcsI	RAATTY	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	32, 98
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	121, 366
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	157, 165, 264
AluI	AGCT	3 cut(s)	157, 165, 264
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	65, 234
Ama87I	CYCGRG	2 cut(s)	158, 259
AoxI	GGCC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	116
AsiGI	ACCGGT	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	8, 40, 256
AvaI	CYCGRG	2 cut(s)	158, 259
AvaII	GGWCC	2 cut(s)	8, 40
BaeI	ACNNNNGTAYC	4 cut(s)	372, 372, 405, 405
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	244, 270
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	65, 234
BfaI	CTAG	2 cut(s)	12, 359
BfuI	GTATCC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	2 cut(s)	8, 40
BmeT110I	CYCGRG	2 cut(s)	158, 259
BmgT120I	GGNCC	3 cut(s)	8, 40, 256
BmiI	GGNNCC	3 cut(s)	24, 258, 304
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	140, 294
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 98
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	140, 294
BseGI	GGATG	2 cut(s)	10, 126
BseLI	CCNNNNNNNGG	2 cut(s)	32, 98
BseNI	ACTGG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	158, 259
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	32, 98
BsmAI	GTCTC	2 cut(s)	65, 234
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	2 cut(s)	158, 259
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	186, 220
BspANI	GGCC	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	24, 258, 304
BspT107I	GGYRCC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	140, 294
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	349
BstACI	GRCGYC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	10, 126
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	65, 234
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 228
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	10, 126
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	8, 40, 256
CseI	GACGC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	2 cut(s)	295, 384
CviJI	RGCY	5 cut(s)	148, 157, 165, 257, 264
CviKI_1	RGCY	5 cut(s)	148, 157, 165, 257, 264
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	8, 40
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	158, 259
EcoICRI	GAGCTC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	298, 387
FaiI	YATR	3 cut(s)	225, 296, 385
FatI	CATG	2 cut(s)	294, 383
FauI	CCCGC	1 cut(s)	193
FokI	GGATG	2 cut(s)	17, 113
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	12, 359
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	4
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	298, 387
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	4 cut(s)	102, 242, 315, 355
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	4 cut(s)	49, 70, 160, 319
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	56, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 228
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	56, 66
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	298, 387
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	8 cut(s)	56, 83, 106, 127, 154, 313, 321, 332
MaeI	CTAG	2 cut(s)	12, 359
MaeII	ACGT	2 cut(s)	56, 66
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	116, 196
MlyI	GAGTC	3 cut(s)	236, 324, 364
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	31, 140, 203
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	154, 228
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	298, 387
NlaIV	GGNNCC	3 cut(s)	24, 258, 304
PaeR7I	CTCGAG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	42
PleI	GAGTC	3 cut(s)	236, 323, 363
PpsI	GAGTC	3 cut(s)	236, 323, 363
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	24, 258, 304
PspPI	GGNCC	3 cut(s)	8, 40, 256
PsyI	GACNNNGTC	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	3 cut(s)	8, 40, 256
SchI	GAGTC	3 cut(s)	236, 324, 364
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	28, 59, 69, 159, 167, 195, 266, 364
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	8, 40
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	116, 196
SsiI	CCGC	2 cut(s)	186, 220
SspMI	CTAG	2 cut(s)	12, 359
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	59, 69
TaqI	TCGA	7 cut(s)	48, 63, 69, 159, 284, 313, 353
TasI	AATT	2 cut(s)	116, 196
TfiI	GAWTC	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	8, 40
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	158
XspI	CTAG	2 cut(s)	12, 359
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.