RchiOBHm_Chr7g0193861

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
12146830 .. 12147060
231 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGACAACGTACTTCTTCGCACATATGGATGATAAGCTCTTGGACGCCATATGCGAATGCCTCAACCCCTCAAGTCATCCTATCGAGGCATTTGCATTCCAAGCTGGAGACCTCAAGTATGTTGCAAGTCAATTTAAGCGCCTTCAAAGCAAAAAACTGTTGCACGCATTTAGGTACTACTCCCACCAATGGAGGACTTCAGTGTGTTTTATACAAGTTGTGTGGAGATAG

Protein Analysis

76

Amino Acids

9.04

Weight (kDa)

8.91

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026679)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0193861
rosa_samantha Rh7BG139400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 11, 176
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 37, 104
AluI AGCT 2 cut(s) 37, 104
Alw26I GTCTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcoDI GTCTC 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 55, 98
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 189
BseGI GGATG 2 cut(s) 34, 76
BseLI CCNNNNNNNGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 102
BsmI GAATGC 2 cut(s) 62, 95
Bso31I GGTCTC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 165
BstF5I GGATG 2 cut(s) 34, 76
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 101, 147
BtsCI GGATG 2 cut(s) 34, 76
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 141
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 10, 175
CspCI CAANNNNNGTGG 1 cut(s) 203
CviJI RGCY 2 cut(s) 37, 104
CviKI_1 RGCY 2 cut(s) 37, 104
CviQI GTAC 2 cut(s) 10, 175
Eco31I GGTCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 183
FaiI YATR 6 cut(s) 24, 26, 50, 52, 120, 212
FauNDI CATATG 2 cut(s) 24, 50
FokI GGATG 2 cut(s) 41, 63
GlaI GCGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 142
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 95, 125, 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 147
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 90
MaeII ACGT 1 cut(s) 8
MboII GAAGA 1 cut(s) 7
MluCI AATT 1 cut(s) 131
MnlI CCTC 5 cut(s) 71, 79, 79, 122, 186
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 62, 95
MwoI GCNNNNNNNGC 2 cut(s) 101, 147
NdeI CATATG 2 cut(s) 24, 50
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 62, 95
RsaI GTAC 2 cut(s) 11, 176
RsaNI GTAC 2 cut(s) 10, 175
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 135
SetI ASST 5 cut(s) 11, 39, 106, 114, 176
SgeI CNNG 9 cut(s) 52, 84, 97, 113, 117, 127, 138, 176, 227
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 70, 113
SmoI CTYRAG 2 cut(s) 70, 113
Sse9I AATT 1 cut(s) 131
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 131
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 207
TspRI CASTG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.